KEGG   PATHWAY: scy00020
Entry
scy00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Streptantibioticus cattleyicolor NRRL 8057 = DSM 46488
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
scy00020  Citrate cycle (TCA cycle)
scy00020

Module
scy_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:scy00020]
scy_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:scy00020]
scy_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:scy00020]
scy_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:scy00020]
scy_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:scy00020]
Other DBs
GO: 0006099
Organism
Streptantibioticus cattleyicolor NRRL 8057 = DSM 46488 [GN:scy]
Gene
SCATT_08610  putative citrate synthase [KO:K01647] [EC:2.3.3.1]
SCATT_08630  citrate synthase-like protein [KO:K01647] [EC:2.3.3.1]
SCATT_23850  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
SCATT_18310  type II citrate synthase [KO:K01647] [EC:2.3.3.1]
SCATT_46620  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
SCATT_p06340  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
SCATT_p02480  catalytic domain of components of various dehydrogenase complexes [KO:K00658] [EC:2.3.1.61]
SCATT_41150  alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
SCATT_13010  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SCATT_01230  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SCATT_34940  oxidoreductase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
SCATT_34930  ferrodoxin oxidoreductase beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
SCATT_36930  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
SCATT_36920  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
SCATT_50830  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SCATT_37470  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SCATT_39440  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SCATT_50820  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
SCATT_37460  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
SCATT_39430  fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
SCATT_50840  succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family [KO:K00241]
SCATT_37490  putative succinate dehydrogenase membrane subunit [KO:K00241]
SCATT_37480  Succinate dehydrogenase hydrophobic anchor subunit-like protein [KO:K00242]
SCATT_38980  fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
SCATT_38970  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
SCATT_37030  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SCATT_38510  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
SCATT_14820  pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
SCATT_44200  pyruvate dehydrogenase (lipoamide) [KO:K00161] [EC:1.2.4.1]
SCATT_44180  dehydrogenase complex, E1 component, beta subunit [KO:K00162] [EC:1.2.4.1]
SCATT_44190  pyruvate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
SCATT_13020  putative dihydrolipoamide S-succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
scy00010  Glycolysis / Gluconeogenesis
scy00053  Ascorbate and aldarate metabolism
scy00061  Fatty acid biosynthesis
scy00071  Fatty acid degradation
scy00190  Oxidative phosphorylation
scy00220  Arginine biosynthesis
scy00250  Alanine, aspartate and glutamate metabolism
scy00280  Valine, leucine and isoleucine degradation
scy00350  Tyrosine metabolism
scy00470  D-Amino acid metabolism
scy00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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