KEGG   PATHWAY: sdur00030
Entry
sdur00030                   Pathway                                
Name
Pentose phosphate pathway - Streptomyces durmitorensis
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sdur00030  Pentose phosphate pathway
sdur00030

Module
sdur_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:sdur00030]
sdur_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:sdur00030]
sdur_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:sdur00030]
sdur_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:sdur00030]
Other DBs
GO: 0006098
Organism
Streptomyces durmitorensis [GN:sdur]
Gene
M4V62_31705  pgi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
M4V62_31720  zwf; glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
M4V62_31710  pgl; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
M4V62_38495  lactonase family protein [KO:K07404] [EC:3.1.1.31]
M4V62_05925  gndA; NADP-dependent phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
M4V62_21590  gnd; decarboxylating 6-phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
M4V62_34755  rpe; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
M4V62_07380  transketolase [KO:K00615] [EC:2.2.1.1]
M4V62_07375  transketolase [KO:K00615] [EC:2.2.1.1]
M4V62_08990  transketolase [KO:K00615] [EC:2.2.1.1]
M4V62_31730  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
M4V62_06615  hypothetical protein [KO:K00616] [EC:2.2.1.2]
M4V62_31725  tal; transaldolase [KO:K00616] [EC:2.2.1.2]
M4V62_27620  ribose-5-phosphate isomerase [KO:K01808] [EC:5.3.1.6]
M4V62_39655  phosphoketolase family protein [KO:K01621] [EC:4.1.2.9 4.1.2.22]
M4V62_03290  phosphoketolase family protein [KO:K01621] [EC:4.1.2.9 4.1.2.22]
M4V62_17150  deoC; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
M4V62_11080  ribokinase [KO:K00852] [EC:2.7.1.15]
M4V62_30970  rbsK; ribokinase [KO:K00852] [EC:2.7.1.15]
M4V62_24915  ribose-phosphate diphosphokinase [KO:K00948] [EC:2.7.6.1]
M4V62_29045  bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
M4V62_29420  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
M4V62_17525  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
M4V62_33430  gluconokinase [KO:K00851] [EC:2.7.1.12]
M4V62_16775  sugar kinase [KO:K00874] [EC:2.7.1.45]
M4V62_29040  sugar kinase [KO:K00874] [EC:2.7.1.45]
M4V62_20775  fbaA; class II fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
M4V62_23425  class II fructose-bisphosphate aldolase family protein [KO:K01624] [EC:4.1.2.13]
M4V62_16540  glpX; class II fructose-bisphosphatase [KO:K02446] [EC:3.1.3.11]
M4V62_04750  6-phosphofructokinase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
M4V62_14545  6-phosphofructokinase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
M4V62_30485  6-phosphofructokinase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
sdur00010  Glycolysis / Gluconeogenesis
sdur00040  Pentose and glucuronate interconversions
sdur00052  Galactose metabolism
sdur00230  Purine metabolism
sdur00240  Pyrimidine metabolism
sdur00340  Histidine metabolism
sdur00630  Glyoxylate and dicarboxylate metabolism
sdur00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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