KEGG   PATHWAY: seen00030
Entry
seen00030                   Pathway                                
Name
Pentose phosphate pathway - Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
seen00030  Pentose phosphate pathway
seen00030

Module
seen_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:seen00030]
seen_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:seen00030]
seen_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:seen00030]
seen_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:seen00030]
seen_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:seen00030]
seen_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:seen00030]
Other DBs
GO: 0006098
Organism
Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736 [GN:seen]
Gene
SE451236_04140  pgi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
SE451236_15375  glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
SE451236_09955  6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
SE451236_16615  6-phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
SE451236_03490  ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
SE451236_00490  epimerase [KO:K01783] [EC:5.1.3.1]
SE451236_17895  transketolase [KO:K00615] [EC:2.2.1.1]
SE451236_17900  carbohydrate degradation protein [KO:K00615] [EC:2.2.1.1]
SE451236_21495  transketolase [KO:K00615] [EC:2.2.1.1]
SE451236_18595  transketolase [KO:K00615] [EC:2.2.1.1]
SE451236_06045  transaldolase [KO:K00616] [EC:2.2.1.2]
SE451236_18590  transaldolase [KO:K00616] [EC:2.2.1.2]
SE451236_21425  ribose 5-phosphate isomerase [KO:K01807] [EC:5.3.1.6]
SE451236_05855  deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
SE451236_01460  ribokinase [KO:K00852] [EC:2.7.1.15]
SE451236_01945  ribokinase [KO:K00852] [EC:2.7.1.15]
SE451236_05865  phosphopentomutase [KO:K01839] [EC:5.4.2.7]
SE451236_09515  phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
SE451236_14840  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
SE451236_15370  phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
SE451236_15365  ketohydroxyglutarate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
SE451236_02080  4-hydroxy-2-ketovalerate aldolase [KO:K17463] [EC:4.1.2.14]
SE451236_06865  glucose dehydrogenase [KO:K00117] [EC:1.1.5.2]
SE451236_02690  bifunctional glyoxylate/hydroxypyruvate reductase B [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
SE451236_05445  idnK; D-gluconate kinase [KO:K00851] [EC:2.7.1.12]
SE451236_03205  gntK; gluconate kinase 1 [KO:K00851] [EC:2.7.1.12]
SE451236_02855  ketodeoxygluconokinase [KO:K00874] [EC:2.7.1.45]
SE451236_02055  PTS fructose transporter subunit IIA [KO:K17464] [EC:2.7.1.203]
SE451236_02060  PTS sugar transporter [KO:K17465] [EC:2.7.1.203]
SE451236_02065  PTS sorbose transporter subunit IIC [KO:K17466]
SE451236_02070  PTS fructose transporter subunit IID [KO:K17467]
SE451236_02075  L-seryl-tRNA selenium transferase [KO:K17468] [EC:4.3.1.29]
SE451236_16905  fructose-bisphosphate aldolase [KO:K11645] [EC:4.1.2.13]
SE451236_21455  fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
SE451236_05105  fructose-1,6-bisphosphatase [KO:K03841] [EC:3.1.3.11]
SE451236_00465  fructose 1,6-bisphosphatase [KO:K02446] [EC:3.1.3.11]
SE451236_00580  6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
SE451236_12500  6-phosphofructokinase [KO:K16370] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
seen00010  Glycolysis / Gluconeogenesis
seen00040  Pentose and glucuronate interconversions
seen00052  Galactose metabolism
seen00230  Purine metabolism
seen00240  Pyrimidine metabolism
seen00340  Histidine metabolism
seen00630  Glyoxylate and dicarboxylate metabolism
seen00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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