KEGG   PATHWAY: seqo00020
Entry
seqo00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Staphylococcus equorum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
seqo00020  Citrate cycle (TCA cycle)
seqo00020

Module
seqo_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:seqo00020]
seqo_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:seqo00020]
seqo_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:seqo00020]
seqo_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:seqo00020]
seqo_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:seqo00020]
Other DBs
GO: 0006099
Organism
Staphylococcus equorum [GN:seqo]
Gene
SE1039_15150  citrate synthase [KO:K01647] [EC:2.3.3.1]
SE1039_11780  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
SE1039_15140  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
SE1039_12630  2-oxoglutarate dehydrogenase E1 [KO:K00164] [EC:1.2.4.2]
SE1039_12620  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
SE1039_08560  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SE1039_13490  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SE1039_11090  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
SE1039_11100  2-oxoacid ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
SE1039_10660  succinyl-CoA synthetase subsunit alpha [KO:K01902] [EC:6.2.1.5]
SE1039_10650  malate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
SE1039_08980  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SE1039_08990  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
SE1039_08970  succinate dehydrogenase cytochrome B558 [KO:K00241]
SE1039_16420  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
SE1039_05180  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SE1039_20330  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
SE1039_24080  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
SE1039_08710  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
SE1039_16070  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
SE1039_08530  pyruvate dehydrogenase E1 subunit alpha [KO:K00161] [EC:1.2.4.1]
SE1039_08540  2-oxoisovalerate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
SE1039_08550  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
seqo00010  Glycolysis / Gluconeogenesis
seqo00053  Ascorbate and aldarate metabolism
seqo00061  Fatty acid biosynthesis
seqo00071  Fatty acid degradation
seqo00190  Oxidative phosphorylation
seqo00220  Arginine biosynthesis
seqo00250  Alanine, aspartate and glutamate metabolism
seqo00280  Valine, leucine and isoleucine degradation
seqo00350  Tyrosine metabolism
seqo00470  D-Amino acid metabolism
seqo00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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