KEGG   PATHWAY: sfd00310
Entry
sfd00310                    Pathway                                
Name
Lysine degradation - Sinorhizobium fredii USDA 257
Class
Metabolism; Amino acid metabolism
Pathway map
sfd00310  Lysine degradation
sfd00310

Other DBs
GO: 0006554
Organism
Sinorhizobium fredii USDA 257 [GN:sfd]
Gene
USDA257_c01470  fadJ; fatty acid oxidation complex subunit alpha [KO:K01782] [EC:1.1.1.35 4.2.1.17 5.1.2.3]
USDA257_c01480  fadA; putative acyltransferase [KO:K00626] [EC:2.3.1.9]
USDA257_c02260  [KO:K18201] [EC:2.7.1.81]
USDA257_c02450  gabD1; succinate-semialdehyde dehydrogenase [NADP+] GabD [KO:K00135] [EC:1.2.1.16 1.2.1.79 1.2.1.20]
USDA257_c03990  dadA2; D-amino acid dehydrogenase small subunit DadA [KO:K26064]
USDA257_c06000  vraB; putative acetyl-CoA C-acetyltransferase VraB [KO:K00626] [EC:2.3.1.9]
USDA257_c10000  dhaS1; putative aldehyde dehydrogenase DhaS [KO:K00128] [EC:1.2.1.3]
USDA257_c10480  mmgC3; acyl-CoA dehydrogenase MmgC [KO:K00252] [EC:1.3.8.6]
USDA257_c10490  yfdE; uncharacterized protein YfdE [KO:K01041]
USDA257_c10560  gabD2; putative succinate-semialdehyde dehydrogenase [NADP+] [KO:K00135] [EC:1.2.1.16 1.2.1.79 1.2.1.20]
USDA257_c17560  gabD4; succinate-semialdehyde dehydrogenase [NADP+] GabD [KO:K00135] [EC:1.2.1.16 1.2.1.79 1.2.1.20]
USDA257_c18870  lpdA1; dihydrolipoyl dehydrogenase LpdA [KO:K00382] [EC:1.8.1.4]
USDA257_c20120  thlA; acetyl-CoA acetyltransferase ThlA [KO:K00626] [EC:2.3.1.9]
USDA257_c20490  [KO:K00128] [EC:1.2.1.3]
USDA257_c29970  gabD5; succinate-semialdehyde dehydrogenase [NADP+] GabD [KO:K00135] [EC:1.2.1.16 1.2.1.79 1.2.1.20]
USDA257_c29990  dhaS4; putative aldehyde dehydrogenase DhaS [KO:K00128] [EC:1.2.1.3]
USDA257_c31420  lpd3; dihydrolipoyl dehydrogenase 3 [KO:K00382] [EC:1.8.1.4]
USDA257_c31430  sucB1; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
USDA257_c34860  lpdA2; dihydrolipoyl dehydrogenase LpdA [KO:K00382] [EC:1.8.1.4]
USDA257_c35000  dat; D-alanine aminotransferase Dat [KO:K00824] [EC:2.6.1.21]
USDA257_c45330  ordL5; putative oxidoreductase OrdL [KO:K26065]
USDA257_c45650  prr; gamma-aminobutyraldehyde dehydrogenase Prr [KO:K00137] [EC:1.2.1.19]
USDA257_c48250  ydcJ1; uncharacterized protein YdcJ [KO:K25986]
USDA257_c49670  [KO:K00128] [EC:1.2.1.3]
USDA257_c54080  lpdV; dihydrolipoyl dehydrogenase LpdV [KO:K00382] [EC:1.8.1.4]
USDA257_c54090  atoB; acetyl-CoA acetyltransferase AtoB [KO:K00626] [EC:2.3.1.9]
USDA257_c55720  lpd; dihydrolipoyl dehydrogenase Lpd [KO:K00382] [EC:1.8.1.4]
USDA257_c55760  sucB2; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
USDA257_c57130  phbA; acetyl-CoA acetyltransferase PhbA [KO:K00626] [EC:2.3.1.9]
USDA257_c58020  ydcJ2; uncharacterized protein YdcJ [KO:K25986]
USDA257_c58040  gabD7; succinate-semialdehyde dehydrogenase [NADP+] GabD [KO:K26061]
USDA257_c58730  gabD8; succinate-semialdehyde dehydrogenase [NADP+] GabD [KO:K00135] [EC:1.2.1.16 1.2.1.79 1.2.1.20]
USDA257_c61190  [KO:K01843] [EC:5.4.3.2]
USDA257_c62210  fadB2; putative enoyl-CoA hydratase FadB [KO:K01692] [EC:4.2.1.17]
Compound
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00037  Glycine
C00042  Succinate
C00047  L-Lysine
C00068  Thiamin diphosphate
C00136  Butanoyl-CoA
C00164  Acetoacetate
C00322  2-Oxoadipate
C00332  Acetoacetyl-CoA
C00408  L-Pipecolate
C00431  5-Aminopentanoate
C00449  N6-(L-1,3-Dicarboxypropyl)-L-lysine
C00450  (S)-2,3,4,5-Tetrahydropyridine-2-carboxylate
C00487  Carnitine
C00489  Glutarate
C00527  Glutaryl-CoA
C00739  D-Lysine
C00877  Crotonoyl-CoA
C00956  L-2-Aminoadipate
C00990  5-Aminopentanamide
C01087  (R)-2-Hydroxyglutarate
C01142  (3S)-3,6-Diaminohexanoate
C01144  (S)-3-Hydroxybutanoyl-CoA
C01149  4-Trimethylammoniobutanal
C01181  4-Trimethylammoniobutanoate
C01186  (3S,5S)-3,5-Diaminohexanoate
C01211  Procollagen 5-hydroxy-L-lysine
C01259  (3S)-3-Hydroxy-N6,N6,N6-trimethyl-L-lysine
C01672  Cadaverine
C02188  Protein lysine
C02727  N6-Acetyl-L-lysine
C03087  5-Acetamidopentanoate
C03196  (S)-2-Hydroxyglutarate
C03239  6-Amino-2-oxohexanoate
C03273  5-Oxopentanoate
C03366  5-Phosphooxy-L-lysine
C03656  (S)-5-Amino-3-oxohexanoic acid
C03793  N6,N6,N6-Trimethyl-L-lysine
C04020  D-Lysopine
C04076  L-2-Aminoadipate 6-semialdehyde
C04092  Delta1-Piperideine-2-carboxylate
C04487  5-(D-Galactosyloxy)-L-lysine-procollagen
C05161  (2R,5S)-2,5-Diaminohexanoate
C05231  L-3-Aminobutyryl-CoA
C05544  Protein N6-methyl-L-lysine
C05545  Protein N6,N6-dimethyl-L-lysine
C05546  Protein N6,N6,N6-trimethyl-L-lysine
C05548  6-Acetamido-2-oxohexanoate
C05825  2-Amino-5-oxohexanoate
C06157  [Dihydrolipoyllysine-residue succinyltransferase] S-glutaryldihydrolipoyllysine
C12455  5-Aminopentanal
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16741  L-Hydroxylysine
C22667  4-Carboxy-1-hydroxybutyryl-ThPP
Reference
PMID:11802770
  Authors
Vaz FM, Wanders RJ.
  Title
Carnitine biosynthesis in mammals.
  Journal
Biochem J 361:417-29 (2002)
DOI:10.1042/bj3610417
Reference
PMID:1682209
  Authors
Large PJ, Robertson A.
  Title
The route of lysine breakdown in Candida tropicalis.
  Journal
FEMS Microbiol Lett 66:209-13 (1991)
DOI:10.1111/j.1574-6968.1990.tb03998.x
Related
pathway
sfd00020  Citrate cycle (TCA cycle)
sfd00300  Lysine biosynthesis
sfd00780  Biotin metabolism
KO pathway
ko00310   

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