KEGG   PATHWAY: shy00030
Entry
shy00030                    Pathway                                
Name
Pentose phosphate pathway - Streptomyces hygroscopicus subsp. jinggangensis 5008
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
shy00030  Pentose phosphate pathway
shy00030

Module
shy_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:shy00030]
shy_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:shy00030]
shy_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:shy00030]
shy_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:shy00030]
Other DBs
GO: 0006098
Organism
Streptomyces hygroscopicus subsp. jinggangensis 5008 [GN:shy]
Gene
SHJG_3397  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
SHJG_7573  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
SHJG_3385  glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
SHJG_7575  glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
SHJG_2470  glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
SHJG_3387  6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
SHJG_8049  putative secreted protein [KO:K07404] [EC:3.1.1.31]
SHJG_5193  6-phosphogluconate dehydrogenase-like protein [KO:K00033] [EC:1.1.1.44 1.1.1.343]
SHJG_7834  putative 6-phosphogluconate 1-dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
SHJG_7572  6-phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
SHJG_2896  ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
SHJG_7455  transketolase [KO:K00615] [EC:2.2.1.1]
SHJG_3383  transketolase [KO:K00615] [EC:2.2.1.1]
SHJG_7577  transketolase [KO:K00615] [EC:2.2.1.1]
SHJG_7681  transketolase B subunit [KO:K00615] [EC:2.2.1.1]
SHJG_7682  transketolase A subunit [KO:K00615] [EC:2.2.1.1]
SHJG_3384  transaldolase [KO:K00616] [EC:2.2.1.2]
SHJG_7576  transaldolase [KO:K00616] [EC:2.2.1.2]
SHJG_4121  ribose-5-phosphate isomerase B [KO:K01808] [EC:5.3.1.6]
SHJG_2244  putative sugar-phosphate isomerase [KO:K01808] [EC:5.3.1.6]
SHJG_1819  putative phosphoketolase [KO:K01621] [EC:4.1.2.9 4.1.2.22]
SHJG_6027  deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
SHJG_4249  carbohydrate kinase [KO:K00852] [EC:2.7.1.15]
SHJG_3508  putative ribokinase [KO:K00852] [EC:2.7.1.15]
SHJG_1995  putative phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
SHJG_4595  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
SHJG_0241  aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
SHJG_8431  aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
SHJG_3788  2-keto-3-deoxygluconate 6-phosphate aldolase and 2-keto-4-hydroxyglutarate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
SHJG_3123  gluconokinase [KO:K00851] [EC:2.7.1.12]
SHJG_2471  gluconokinase [KO:K00851] [EC:2.7.1.12]
SHJG_0239  PfkB-family carbohydrate kinase [KO:K00874] [EC:2.7.1.45]
SHJG_6093  2-oxo-3-deoxygluconate kinase [KO:K00874] [EC:2.7.1.45]
SHJG_8433  PfkB-family carbohydrate kinase [KO:K00874] [EC:2.7.1.45]
SHJG_5386  fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
SHJG_2507  tagatose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
SHJG_6144  fructose 1,6-bisphosphatase II [KO:K02446] [EC:3.1.3.11]
SHJG_6502  6-phosphofructokinase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
SHJG_3602  6-phosphofructokinase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
SHJG_2653  6-phosphofructokinase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
shy00010  Glycolysis / Gluconeogenesis
shy00040  Pentose and glucuronate interconversions
shy00052  Galactose metabolism
shy00230  Purine metabolism
shy00240  Pyrimidine metabolism
shy00340  Histidine metabolism
shy00630  Glyoxylate and dicarboxylate metabolism
shy00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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