KEGG   PATHWAY: sld00020
Entry
sld00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Streptomyces lydicus A02
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sld00020  Citrate cycle (TCA cycle)
sld00020

Module
sld_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sld00020]
sld_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sld00020]
sld_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sld00020]
sld_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sld00020]
sld_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sld00020]
Other DBs
GO: 0006099
Organism
Streptomyces lydicus A02 [GN:sld]
Gene
T261_5334  Citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
T261_3326  Putative citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
T261_2052  Aconitate hydratase A [KO:K01681] [EC:4.2.1.3]
T261_6787  Isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
T261_3236  Isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
T261_2749  hypothetical protein [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
T261_5994  hypothetical protein [KO:K00382] [EC:1.8.1.4]
T261_1991  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
T261_4615  2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
T261_4614  2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
T261_3246  Succinyl-CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
T261_3247  Succinyl-CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
T261_6131  hypothetical protein [KO:K00239] [EC:1.3.5.1]
T261_2967  Fumarate reductase (CoM/CoB) subunit A [KO:K00239] [EC:1.3.5.1]
T261_3168  Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
T261_6130  hypothetical protein [KO:K00240] [EC:1.3.5.1]
T261_2968  hypothetical protein [KO:K00240] [EC:1.3.5.1]
T261_3169  Succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
T261_6132  hypothetical protein [KO:K00241]
T261_3166  Succinate dehydrogenase 2 membrane subunit SdhC [KO:K00241]
T261_3167  hypothetical protein [KO:K00242]
T261_2995  Fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
T261_2998  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
T261_3233  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
T261_3055  Phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
T261_5689  Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
T261_5991  Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
T261_5993  Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sld00010  Glycolysis / Gluconeogenesis
sld00053  Ascorbate and aldarate metabolism
sld00061  Fatty acid biosynthesis
sld00071  Fatty acid degradation
sld00190  Oxidative phosphorylation
sld00220  Arginine biosynthesis
sld00250  Alanine, aspartate and glutamate metabolism
sld00280  Valine, leucine and isoleucine degradation
sld00350  Tyrosine metabolism
sld00470  D-Amino acid metabolism
sld00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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