KEGG   PATHWAY: smeg00020
Entry
smeg00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Sinorhizobium meliloti GR4
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
smeg00020  Citrate cycle (TCA cycle)
smeg00020

Module
smeg_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:smeg00020]
smeg_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:smeg00020]
smeg_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:smeg00020]
smeg_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:smeg00020]
smeg_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:smeg00020]
Other DBs
GO: 0006099
Organism
Sinorhizobium meliloti GR4 [GN:smeg]
Gene
C770_GR4Chr1527  citrate synthase I (hexameric type) [KO:K01647] [EC:2.3.3.1]
C770_GR4Chr3322  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
C770_GR4pC0287  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
C770_GR4Chr1843  isocitrate dehydrogenase, NADP-dependent, eukaryotic type [KO:K00031] [EC:1.1.1.42]
C770_GR4Chr3190  2-oxoglutarate dehydrogenase, E1 component [KO:K00164] [EC:1.2.4.2]
C770_GR4Chr3189  2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component) [KO:K00658] [EC:2.3.1.61]
C770_GR4pD0029  Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component-related enzyme [KO:K00658] [EC:2.3.1.61]
C770_GR4Chr3065  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
C770_GR4Chr1470  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
C770_GR4Chr3185  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
C770_GR4Chr3191  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
C770_GR4Chr3192  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
C770_GR4Chr3207  succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
C770_GR4Chr3206  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
C770_GR4Chr3209  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
C770_GR4Chr3208  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
C770_GR4Chr1914  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
C770_GR4Chr3193  malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
C770_GR4Chr3371  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
C770_GR4Chr0045  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
C770_GR4Chr1465  pyruvate dehydrogenase E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
C770_GR4Chr1466  Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [KO:K00162] [EC:1.2.4.1]
C770_GR4Chr1467  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
smeg00010  Glycolysis / Gluconeogenesis
smeg00053  Ascorbate and aldarate metabolism
smeg00061  Fatty acid biosynthesis
smeg00071  Fatty acid degradation
smeg00190  Oxidative phosphorylation
smeg00220  Arginine biosynthesis
smeg00250  Alanine, aspartate and glutamate metabolism
smeg00280  Valine, leucine and isoleucine degradation
smeg00350  Tyrosine metabolism
smeg00470  D-Amino acid metabolism
smeg00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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