KEGG   PATHWAY: sml00260
Entry
sml00260                    Pathway                                
Name
Glycine, serine and threonine metabolism - Stenotrophomonas maltophilia K279a
Description
Serine is derived from 3-phospho-D-glycerate, an intermediate of glycolysis [MD:M00020], and glycine is derived from serine. Threonine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, threonine is derived from aspartate [MD:M00018].
Class
Metabolism; Amino acid metabolism
Pathway map
sml00260  Glycine, serine and threonine metabolism
sml00260

Module
sml_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:sml00260]
sml_M00338  Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:sml00260]
sml_M00555  Betaine biosynthesis, choline => betaine [PATH:sml00260]
sml_M00621  Glycine cleavage system [PATH:sml00260]
Other DBs
GO: 0006544 0006563 0070178 0006566
Organism
Stenotrophomonas maltophilia K279a [GN:sml]
Gene
Smlt2156  thrA; putative bifunctional aspartokinase/homoserine dehydrogenase I [KO:K12524] [EC:2.7.2.4 1.1.1.3]
Smlt1168  putative lysine-sensitive aspartokinase III [KO:K12526] [EC:4.1.1.20 2.7.2.4]
Smlt3427  asd; putative aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
Smlt3633  thrA; putative homoserine dehydrogenase [KO:K00003] [EC:1.1.1.3]
Smlt2157  thrB; putative homoserine kinase [KO:K00872] [EC:2.7.1.39]
Smlt2158  thrC; putative threonine synthase [KO:K01733] [EC:4.2.3.1]
Smlt0718  glyA; putative serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
Smlt3428  putative 2-ketogluconate reductase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
Smlt1430  gpmA; putative phosphoglycerate mutase 1 [KO:K01834] [EC:5.4.2.11]
Smlt3617  conserved hypothetical protein [KO:K15918] [EC:2.7.1.31]
Smlt2195  serA; putative D-3-phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
Smlt3098  serC; putative phosphoserine aminotransferase [KO:K00831] [EC:2.6.1.52]
Smlt0959  kbl; putative 2-amino-3-ketobutyrate coenzyme A ligase [KO:K00639] [EC:2.3.1.29]
Smlt0961  tdh; putative threonine 3-dehydrogenase [KO:K00060] [EC:1.1.1.103]
Smlt3579  gcvP; putative glycine dehydrogenase [decarboxylating] [KO:K00281] [EC:1.4.4.2]
Smlt3658  gcvT; putative aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
Smlt4120  lpdA; putative dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Smlt3199  odhL; putative dihydrolipoyl dehydrogenase (E3 component of 2-oxoglutarate dehydrogenase complex) [KO:K00382] [EC:1.8.1.4]
Smlt3657  gcvH; putative glycine cleavage system H protein [KO:K02437]
Smlt2966  putative transmembrane CDP-diacylglycerol--serine O-phosphatidyltransferase [KO:K17103] [EC:2.7.8.8]
Smlt0669  putative transmembrane CDP-diacylglycerol--serine O-phosphatidyltransferase [KO:K17103] [EC:2.7.8.8]
Smlt2237  betA; putative choline dehydrogenase [KO:K00108] [EC:1.1.99.1]
Smlt2238  betB; putative betaine aldehyde dehydrogenase [KO:K00130] [EC:1.2.1.8]
Smlt0616  cbsB; putative cystathionine beta-synthase [KO:K01697] [EC:4.2.1.22]
Smlt0617  mtcC; putative cystathionine beta/gamma-lyase [KO:K01758] [EC:4.4.1.1]
Smlt3631  sdaA; putative L-serine dehydratase I [KO:K01752] [EC:4.3.1.17]
Smlt4470  putative pyridoxal-phosphate dependent enzyme [KO:K01754] [EC:4.3.1.19]
Smlt3916  tdcB; putative catabolic threonine dehydratase [KO:K01754] [EC:4.3.1.19]
Smlt3366  putative aspartate/glutamate racemase [KO:K25316] [EC:5.1.1.10]
Smlt3417  trpA; putative tryptophan synthase alpha chain [KO:K01695] [EC:4.2.1.20]
Smlt3419  trpB; putative tryptophan synthase beta chain [KO:K01696] [EC:4.2.1.20]
Compound
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00037  Glycine
C00048  Glyoxylate
C00049  L-Aspartate
C00065  L-Serine
C00078  L-Tryptophan
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00109  2-Oxobutanoate
C00114  Choline
C00143  5,10-Methylenetetrahydrofolate
C00168  Hydroxypyruvate
C00188  L-Threonine
C00197  3-Phospho-D-glycerate
C00213  Sarcosine
C00258  D-Glycerate
C00263  L-Homoserine
C00300  Creatine
C00430  5-Aminolevulinate
C00441  L-Aspartate 4-semialdehyde
C00546  Methylglyoxal
C00576  Betaine aldehyde
C00581  Guanidinoacetate
C00631  2-Phospho-D-glycerate
C00719  Betaine
C00740  D-Serine
C00986  1,3-Diaminopropane
C01005  O-Phospho-L-serine
C01026  N,N-Dimethylglycine
C01102  O-Phospho-L-homoserine
C01242  [Protein]-S8-aminomethyldihydrolipoyllysine
C01888  Aminoacetone
C02051  Lipoylprotein
C02291  L-Cystathionine
C02737  Phosphatidylserine
C02972  Dihydrolipoylprotein
C03082  4-Phospho-L-aspartate
C03194  (R)-1-Aminopropan-2-ol
C03232  3-Phosphonooxypyruvate
C03283  L-2,4-Diaminobutanoate
C03508  L-2-Amino-3-oxobutanoic acid
C05519  L-Allothreonine
C06231  Ectoine
C06442  N(gamma)-Acetyldiaminobutyrate
C16432  5-Hydroxyectoine
C19929  N(alpha)-Acetyl-L-2,4-diaminobutyrate
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
PMID:11823218
  Authors
Kuhlmann AU, Bremer E.
  Title
Osmotically regulated synthesis of the compatible solute ectoine in Bacillus pasteurii and related Bacillus spp.
  Journal
Appl Environ Microbiol 68:772-83 (2002)
DOI:10.1128/AEM.68.2.772-783.2002
Reference
PMID:10473374
  Authors
Canovas D, Borges N, Vargas C, Ventosa A, Nieto JJ, Santos H.
  Title
Role of Ngamma-acetyldiaminobutyrate as an enzyme stabilizer and an intermediate in the biosynthesis of hydroxyectoine.
  Journal
Appl Environ Microbiol 65:3774-9 (1999)
DOI:10.1128/AEM.65.9.3774-3779.1999
Reference
PMID:17636255
  Authors
Bursy J, Pierik AJ, Pica N, Bremer E.
  Title
Osmotically induced synthesis of the compatible solute hydroxyectoine is mediated by an evolutionarily conserved ectoine hydroxylase.
  Journal
J Biol Chem 282:31147-55 (2007)
DOI:10.1074/jbc.M704023200
Reference
PMID:16707670
  Authors
Garcia-Estepa R, Argandona M, Reina-Bueno M, Capote N, Iglesias-Guerra F, Nieto JJ, Vargas C.
  Title
The ectD gene, which is involved in the synthesis of the compatible solute hydroxyectoine, is essential for thermoprotection of the halophilic bacterium Chromohalobacter salexigens.
  Journal
J Bacteriol 188:3774-84 (2006)
DOI:10.1128/JB.00136-06
Reference
PMID:15470257
  Authors
Arevalo-Rodriguez M, Pan X, Boeke JD, Heitman J
  Title
FKBP12 controls aspartate pathway flux in Saccharomyces cerevisiae to prevent toxic intermediate accumulation.
  Journal
Eukaryot Cell 3:1287-96 (2004)
DOI:10.1128/EC.3.5.1287-1296.2004
Reference
PMID:7639721
  Authors
Rees WD, Hay SM
  Title
The biosynthesis of threonine by mammalian cells: expression of a complete bacterial biosynthetic pathway in an animal cell.
  Journal
Biochem J 309 ( Pt 3):999-1007 (1995)
DOI:10.1042/bj3090999
Reference
PMID:11341914
  Authors
Jacques SL, Nieman C, Bareich D, Broadhead G, Kinach R, Honek JF, Wright GD
  Title
Characterization of yeast homoserine dehydrogenase, an antifungal target: the invariant histidine 309 is important for enzyme integrity.
  Journal
Biochim Biophys Acta 1544:28-41 (2001)
DOI:10.1016/S0167-4838(00)00203-X
Reference
PMID:15520012
  Authors
Chen X, Jhee KH, Kruger WD
  Title
Production of the neuromodulator H2S by cystathionine beta-synthase via the condensation of cysteine and homocysteine.
  Journal
J Biol Chem 279:52082-6 (2004)
DOI:10.1074/jbc.C400481200
Related
pathway
sml00010  Glycolysis / Gluconeogenesis
sml00020  Citrate cycle (TCA cycle)
sml00230  Purine metabolism
sml00250  Alanine, aspartate and glutamate metabolism
sml00270  Cysteine and methionine metabolism
sml00290  Valine, leucine and isoleucine biosynthesis
sml00300  Lysine biosynthesis
sml00330  Arginine and proline metabolism
sml00460  Cyanoamino acid metabolism
sml00470  D-Amino acid metabolism
sml00564  Glycerophospholipid metabolism
sml00600  Sphingolipid metabolism
sml00620  Pyruvate metabolism
sml00630  Glyoxylate and dicarboxylate metabolism
sml00640  Propanoate metabolism
sml00680  Methane metabolism
sml00860  Porphyrin metabolism
sml00920  Sulfur metabolism
KO pathway
ko00260   
LinkDB

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