KEGG   PATHWAY: sml00020
Entry
sml00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Stenotrophomonas maltophilia K279a
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sml00020  Citrate cycle (TCA cycle)
sml00020

Module
sml_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sml00020]
sml_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sml00020]
sml_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sml00020]
sml_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sml00020]
Other DBs
GO: 0006099
Organism
Stenotrophomonas maltophilia K279a [GN:sml]
Gene
Smlt3835  gltA; putative citrate synthase [KO:K01647] [EC:2.3.3.1]
Smlt3609  prpC; putative 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
Smlt2241  acn; putative IRON-REGULATED ACONITATE HYDRATASE ACN (Citrate hydro-lyase) (Aconitase) [KO:K27802] [EC:4.2.1.3 4.2.1.99]
Smlt2245  acnB; putative aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Smlt4273  icd; putative isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
Smlt0982  putative isocitrate/isopropylmalate dehydrogenase [KO:K00030] [EC:1.1.1.41]
Smlt3197  sucA; putative 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
Smlt3198  sucB; putative dihydrolipoamide succinyltransferase E2 component [KO:K00658] [EC:2.3.1.61]
Smlt4120  lpdA; putative dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Smlt3199  odhL; putative dihydrolipoyl dehydrogenase (E3 component of 2-oxoglutarate dehydrogenase complex) [KO:K00382] [EC:1.8.1.4]
Smlt3752  sucD; putative succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
Smlt3753  sucC; succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
Smlt0471  putative acetyl-CoA hydrolase/transferase [KO:K18118] [EC:2.8.3.18]
Smlt1798  sdhA; putative succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Smlt1799  sdhB; putative succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Smlt1796  sdhC; putative succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
Smlt1797  sdhD; putative succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
Smlt3222  putative fumarate hydratase [KO:K01676] [EC:4.2.1.2]
Smlt3191  fumC; putative fumarate hydratase C [KO:K01679] [EC:4.2.1.2]
Smlt0944  mdh; putative malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Smlt1234  mqo; putative malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
Smlt1748  aceE; putative pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
Smlt0490  putative pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
Smlt4121  pdhB; putative dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sml00010  Glycolysis / Gluconeogenesis
sml00053  Ascorbate and aldarate metabolism
sml00061  Fatty acid biosynthesis
sml00071  Fatty acid degradation
sml00190  Oxidative phosphorylation
sml00220  Arginine biosynthesis
sml00250  Alanine, aspartate and glutamate metabolism
sml00280  Valine, leucine and isoleucine degradation
sml00350  Tyrosine metabolism
sml00470  D-Amino acid metabolism
sml00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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