KEGG   PATHWAY: snk00020
Entry
snk00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Streptomyces nitrosporeus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
snk00020  Citrate cycle (TCA cycle)
snk00020

Module
snk_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:snk00020]
snk_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:snk00020]
snk_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:snk00020]
snk_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:snk00020]
snk_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:snk00020]
Other DBs
GO: 0006099
Organism
Streptomyces nitrosporeus [GN:snk]
Gene
CP967_07550  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
CP967_07555  helix-turn-helix domain-containing protein [KO:K01647] [EC:2.3.3.1]
CP967_14245  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
CP967_22680  citrate synthase [KO:K01647] [EC:2.3.3.1]
CP967_06000  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
CP967_04320  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CP967_10570  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
CP967_25165  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CP967_13815  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CP967_13820  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CP967_12880  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
CP967_12885  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
CP967_00680  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CP967_12705  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CP967_00675  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CP967_12710  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CP967_00685  succinate dehydrogenase [KO:K00241]
CP967_12695  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
CP967_12700  succinate dehydrogenase [KO:K00242]
CP967_11640  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
CP967_11645  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
CP967_12830  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CP967_06930  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
CP967_11975  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
CP967_24035  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
CP967_25150  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
CP967_25160  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
snk00010  Glycolysis / Gluconeogenesis
snk00053  Ascorbate and aldarate metabolism
snk00061  Fatty acid biosynthesis
snk00071  Fatty acid degradation
snk00190  Oxidative phosphorylation
snk00220  Arginine biosynthesis
snk00250  Alanine, aspartate and glutamate metabolism
snk00280  Valine, leucine and isoleucine degradation
snk00350  Tyrosine metabolism
snk00470  D-Amino acid metabolism
snk00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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