KEGG   PATHWAY: snr00020
Entry
snr00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Streptomyces noursei ATCC 11455
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
snr00020  Citrate cycle (TCA cycle)
snr00020

Module
snr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:snr00020]
snr_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:snr00020]
snr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:snr00020]
snr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:snr00020]
snr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:snr00020]
Other DBs
GO: 0006099
Organism
Streptomyces noursei ATCC 11455 [GN:snr]
Gene
SNOUR_02280  [KO:K00161] [EC:1.2.4.1]
SNOUR_02285  [KO:K00162] [EC:1.2.4.1]
SNOUR_02290  [KO:K00627] [EC:2.3.1.12]
SNOUR_12030  acnA; Aconitate hydratase 1 [KO:K27802]
SNOUR_15075  kgd; oxoglutarate dehydrogenase (succinyl-transferring) [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
SNOUR_15955  [KO:K00239] [EC:1.3.5.1]
SNOUR_15960  [KO:K00240] [EC:1.3.5.1]
SNOUR_16110  fumB; fumarate hydratase [KO:K01676] [EC:4.2.1.2]
SNOUR_16150  fumC; fumarase, class II [KO:K01679] [EC:4.2.1.2]
SNOUR_16390  pckG; Phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
SNOUR_16940  [KO:K00241]
SNOUR_16945  [KO:K00242]
SNOUR_16950  [KO:K00239] [EC:1.3.5.1]
SNOUR_16955  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
SNOUR_17130  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SNOUR_17135  [KO:K00031] [EC:1.1.1.42]
SNOUR_17185  sucD; Succinyl-CoA ligase (ADP-forming) subunit alpha [KO:K01902] [EC:6.2.1.5]
SNOUR_17190  sucC; Succinyl-CoA ligase (ADP-forming) subunit beta [KO:K01903] [EC:6.2.1.5]
SNOUR_17670  citA; Putative citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
SNOUR_22995  korB; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
SNOUR_23000  korA; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
SNOUR_26625  gltA2; citrate synthase [KO:K01647] [EC:2.3.3.1]
SNOUR_28350  [KO:K00163] [EC:1.2.4.1]
SNOUR_29475  [KO:K00163] [EC:1.2.4.1]
SNOUR_29485  [KO:K00627] [EC:2.3.1.12]
SNOUR_29490  [KO:K00382] [EC:1.8.1.4]
SNOUR_30130  [KO:K00240] [EC:1.3.5.1]
SNOUR_30135  [KO:K00239] [EC:1.3.5.1]
SNOUR_30140  [KO:K00241]
SNOUR_33110  [KO:K00031] [EC:1.1.1.42]
SNOUR_37990  lpd; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
snr00010  Glycolysis / Gluconeogenesis
snr00053  Ascorbate and aldarate metabolism
snr00061  Fatty acid biosynthesis
snr00071  Fatty acid degradation
snr00190  Oxidative phosphorylation
snr00220  Arginine biosynthesis
snr00250  Alanine, aspartate and glutamate metabolism
snr00280  Valine, leucine and isoleucine degradation
snr00350  Tyrosine metabolism
snr00470  D-Amino acid metabolism
snr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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