KEGG   PATHWAY: sof00030
Entry
sof00030                    Pathway                                
Name
Pentose phosphate pathway - Serratia odorifera
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sof00030  Pentose phosphate pathway
sof00030

Module
sof_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:sof00030]
sof_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:sof00030]
sof_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:sof00030]
sof_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:sof00030]
sof_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:sof00030]
sof_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:sof00030]
Other DBs
GO: 0006098
Organism
Serratia odorifera [GN:sof]
Gene
NCTC11214_02130  pgi; Glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
NCTC11214_04101  zwf_1; Glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
NCTC11214_04102  zwf_2; Glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
NCTC11214_05598  pgl; 6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
NCTC11214_02298  6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
NCTC11214_05310  gnd_1; 6-phosphogluconate dehydrogenase, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
NCTC11214_01349  rpe; Ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
NCTC11214_04230  tktB_2; Transketolase 2 [KO:K00615] [EC:2.2.1.1]
NCTC11214_04231  dxs_4; 1-deoxy-D-xylulose-5-phosphate synthase [KO:K00615] [EC:2.2.1.1]
NCTC11214_01861  tktB_1; Transketolase 2 [KO:K00615] [EC:2.2.1.1]
NCTC11214_01862  dxs_2; 1-deoxy-D-xylulose-5-phosphate synthase [KO:K00615] [EC:2.2.1.1]
NCTC11214_02681  tktA_1; Transketolase 1 [KO:K00615] [EC:2.2.1.1]
NCTC11214_02683  tktA_3; Transketolase 1 [KO:K00615] [EC:2.2.1.1]
NCTC11214_03182  tktA_5; Transketolase 1 [KO:K00615] [EC:2.2.1.1]
NCTC11214_03358  tkt; Transketolase [KO:K00615] [EC:2.2.1.1]
NCTC11214_03359  dxs_3; 1-deoxy-D-xylulose-5-phosphate synthase [KO:K00615] [EC:2.2.1.1]
NCTC11214_00844  talB; Transaldolase B [KO:K00616] [EC:2.2.1.2]
NCTC11214_03183  talA; Transaldolase A [KO:K00616] [EC:2.2.1.2]
NCTC11214_02696  rpiA; Ribose-5-phosphate isomerase A [KO:K01807] [EC:5.3.1.6]
NCTC11214_04390  rpiR_3; Als operon repressor [KO:K08094] [EC:5.3.1.27]
NCTC11214_05281  deoC1; Deoxyribose-phosphate aldolase 1 [KO:K01619] [EC:4.1.2.4]
NCTC11214_00881  deoC; Deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
NCTC11214_04388  rbsK_4; Ribokinase [KO:K00852] [EC:2.7.1.15]
NCTC11214_05279  rbsK_5; Ribokinase [KO:K00852] [EC:2.7.1.15]
NCTC11214_00517  rbsK_1; Ribokinase [KO:K00852] [EC:2.7.1.15]
NCTC11214_01701  rbsK_2; Ribokinase [KO:K00852] [EC:2.7.1.15]
NCTC11214_03602  rbsK_3; Ribokinase [KO:K00852] [EC:2.7.1.15]
NCTC11214_00879  deoB; Phosphopentomutase [KO:K01839] [EC:5.4.2.7]
NCTC11214_05683  pgm; Phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
NCTC11214_01075  phnN; Ribose 1,5-bisphosphate phosphokinase PhnN [KO:K05774] [EC:2.7.4.23]
NCTC11214_04044  prs_2; Ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
NCTC11214_02118  ilvD_2; Dihydroxy-acid dehydratase [KO:K01690] [EC:4.2.1.12]
NCTC11214_04104  eda_2; KHG/KDPG aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
NCTC11214_02117  eda_1; KHG/KDPG aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
NCTC11214_04111  Protein of uncharacterised function (DUF1341) [KO:K17463] [EC:4.1.2.14]
NCTC11214_04416  gcd; Quinoprotein glucose dehydrogenase [KO:K00117] [EC:1.1.5.2]
NCTC11214_04704  Gluconate 2-dehydrogenase flavoprotein precursor [KO:K06151] [EC:1.1.99.3]
NCTC11214_04705  Gluconate 2-dehydrogenase subunit 3 precursor [KO:K06152] [EC:1.1.99.3]
NCTC11214_01778  ghrB; Glyoxylate/hydroxypyruvate reductase B [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
NCTC11214_01414  gntK_1; Thermoresistant gluconokinase [KO:K00851] [EC:2.7.1.12]
NCTC11214_02119  gntK_2; Thermoresistant gluconokinase [KO:K00851] [EC:2.7.1.12]
NCTC11214_01472  iolC_3; 5-dehydro-2-deoxygluconokinase [KO:K00874] [EC:2.7.1.45]
NCTC11214_01780  ydjH; Uncharacterized sugar kinase ydjH [KO:K00874] [EC:2.7.1.45]
NCTC11214_04106  PTS system mannose-specific transporter subunits IIAB [KO:K17464] [EC:2.7.1.203]
NCTC11214_04107  levE; Fructose-specific phosphotransferase enzyme IIB component [KO:K17465] [EC:2.7.1.203]
NCTC11214_04108  agaC; PTS system N-acetylgalactosamine-specific EIIC component 1 [KO:K17466]
NCTC11214_04109  manZ_2; PTS system mannose-specific EIID component [KO:K17467]
NCTC11214_04110  selA_3; L-seryl-tRNA(Sec) selenium transferase [KO:K17468] [EC:4.3.1.29]
NCTC11214_03095  fbaB; Fructose-bisphosphate aldolase class 1 [KO:K11645] [EC:4.1.2.13]
NCTC11214_04542  fba; Fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
NCTC11214_02690  fbaA; Fructose-bisphosphate aldolase class 2 [KO:K01624] [EC:4.1.2.13]
NCTC11214_01139  fbp; Fructose-1,6-bisphosphatase class 1 [KO:K03841] [EC:3.1.3.11]
NCTC11214_01538  glpX_1; Fructose-1,6-bisphosphatase 1 class 2 [KO:K02446] [EC:3.1.3.11]
NCTC11214_04539  pfkA_2; 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
NCTC11214_01546  pfkA_1; 6-phosphofructokinase isozyme 1 [KO:K00850] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
sof00010  Glycolysis / Gluconeogenesis
sof00040  Pentose and glucuronate interconversions
sof00052  Galactose metabolism
sof00230  Purine metabolism
sof00240  Pyrimidine metabolism
sof00340  Histidine metabolism
sof00630  Glyoxylate and dicarboxylate metabolism
sof00750  Vitamin B6 metabolism
KO pathway
ko00030   
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