KEGG   PATHWAY: sof00010
Entry
sof00010                    Pathway                                
Name
Glycolysis / Gluconeogenesis - Serratia odorifera
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sof00010  Glycolysis / Gluconeogenesis
sof00010

Module
sof_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:sof00010]
sof_M00002  Glycolysis, core module involving three-carbon compounds [PATH:sof00010]
sof_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sof00010]
sof_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sof00010]
Other DBs
GO: 0006096 0006094
Organism
Serratia odorifera [GN:sof]
Gene
NCTC11214_03267  glk; Glucokinase [KO:K00845] [EC:2.7.1.2]
NCTC11214_02130  pgi; Glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
NCTC11214_04539  pfkA_2; 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
NCTC11214_01546  pfkA_1; 6-phosphofructokinase isozyme 1 [KO:K00850] [EC:2.7.1.11]
NCTC11214_01139  fbp; Fructose-1,6-bisphosphatase class 1 [KO:K03841] [EC:3.1.3.11]
NCTC11214_01538  glpX_1; Fructose-1,6-bisphosphatase 1 class 2 [KO:K02446] [EC:3.1.3.11]
NCTC11214_03095  fbaB; Fructose-bisphosphate aldolase class 1 [KO:K11645] [EC:4.1.2.13]
NCTC11214_04542  fba; Fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
NCTC11214_02690  fbaA; Fructose-bisphosphate aldolase class 2 [KO:K01624] [EC:4.1.2.13]
NCTC11214_01544  tpiA; Triosephosphate isomerase [KO:K01803] [EC:5.3.1.1]
NCTC11214_04153  gapA; Glyceraldehyde-3-phosphate dehydrogenase A [KO:K00134] [EC:1.2.1.12]
NCTC11214_02689  pgk; Phosphoglycerate kinase [KO:K00927] [EC:2.7.2.3]
NCTC11214_05613  gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [KO:K01834] [EC:5.4.2.11]
NCTC11214_00856  cobC; Alpha-ribazole phosphatase [KO:K15634] [EC:5.4.2.11]
NCTC11214_01866  Phosphoglyceromutase [KO:K15634] [EC:5.4.2.11]
NCTC11214_01607  gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [KO:K15633] [EC:5.4.2.12]
NCTC11214_00713  eno_2; Enolase [KO:K01689] [EC:4.2.1.11]
NCTC11214_00715  eno_4; Enolase [KO:K01689] [EC:4.2.1.11]
NCTC11214_04098  pykA_2; Pyruvate kinase II [KO:K00873] [EC:2.7.1.40]
NCTC11214_04636  pykF; Pyruvate kinase I [KO:K00873] [EC:2.7.1.40]
NCTC11214_04659  ppsA; Phosphoenolpyruvate synthase [KO:K01007] [EC:2.7.9.2]
NCTC11214_02607  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
NCTC11214_02608  aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
NCTC11214_01510  merA; Mercuric reductase [KO:K00382] [EC:1.8.1.4]
NCTC11214_02609  lpdA; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NCTC11214_04289  porA; Pyruvate synthase subunit porA [KO:K03737] [EC:1.2.7.1 1.2.7.-]
NCTC11214_05375  frmA_1; S-(hydroxymethyl)glutathione dehydrogenase [KO:K00121] [EC:1.1.1.284 1.1.1.1]
NCTC11214_05376  frmA_2; S-(hydroxymethyl)glutathione dehydrogenase [KO:K00121] [EC:1.1.1.284 1.1.1.1]
NCTC11214_04181  adhE_1; Aldehyde-alcohol dehydrogenase [KO:K04072] [EC:1.2.1.10 1.1.1.1]
NCTC11214_02131  adhA; Alcohol dehydrogenase 1 [KO:K13953] [EC:1.1.1.1]
NCTC11214_00289  adhC2_1; NADP-dependent alcohol dehydrogenase C 2 [KO:K13979] [EC:1.1.1.2]
NCTC11214_02493  adhC2_2; NADP-dependent alcohol dehydrogenase C 2 [KO:K13979] [EC:1.1.1.2]
NCTC11214_03597  yahK; Uncharacterized zinc-type alcohol dehydrogenase-like protein YahK [KO:K13979] [EC:1.1.1.2]
NCTC11214_04703  Gluconate 2-dehydrogenase cytochrome c subunit precursor [KO:K22474] [EC:1.1.5.5]
NCTC11214_01213  adhB_1; Alcohol dehydrogenase cytochrome c subunit precursor [KO:K22474] [EC:1.1.5.5]
NCTC11214_03936  astD_2; N-succinylglutamate 5-semialdehyde dehydrogenase [KO:K00128] [EC:1.2.1.3]
NCTC11214_04454  puuC_2; Aldehyde dehydrogenase PuuC [KO:K00128] [EC:1.2.1.3]
NCTC11214_00495  feaB_2; Phenylacetaldehyde dehydrogenase [KO:K00128] [EC:1.2.1.3]
NCTC11214_00930  xylG_1; 2-hydroxymuconic semialdehyde dehydrogenase [KO:K00128] [EC:1.2.1.3]
NCTC11214_04397  aldB_2; Aldehyde dehydrogenase B [KO:K00138] [EC:1.2.1.-]
NCTC11214_01230  acs_1; Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
NCTC11214_05611  galM; Aldose 1-epimerase [KO:K01785] [EC:5.1.3.3]
NCTC11214_03615  agp_2; Glucose-1-phosphatase precursor [KO:K01085] [EC:3.1.3.10]
NCTC11214_01674  yihX; Phosphatase yihX [KO:K20866] [EC:3.1.3.10]
NCTC11214_05683  pgm; Phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
NCTC11214_04152  yeaD; Putative glucose-6-phosphate 1-epimerase [KO:K01792] [EC:5.1.3.15]
NCTC11214_04737  pckA_3; Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
NCTC11214_01375  pckA_2; Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
NCTC11214_01332  chbF; 6-phospho-beta-glucosidase [KO:K01222] [EC:3.2.1.86]
NCTC11214_01083  bglH_1; Aryl-phospho-beta-D-glucosidase BglH [KO:K01223] [EC:3.2.1.86]
NCTC11214_01084  bglH_2; Aryl-phospho-beta-D-glucosidase BglH [KO:K01223] [EC:3.2.1.86]
NCTC11214_01872  bglH_3; Aryl-phospho-beta-D-glucosidase BglH [KO:K01223] [EC:3.2.1.86]
NCTC11214_02786  gmuD_1; 6-phospho-beta-glucosidase gmuD [KO:K01223] [EC:3.2.1.86]
NCTC11214_03632  gmuD_2; 6-phospho-beta-glucosidase gmuD [KO:K01223] [EC:3.2.1.86]
NCTC11214_03217  crr; Glucose-specific phosphotransferase enzyme IIA component [KO:K02777] [EC:2.7.1.-]
NCTC11214_04908  ptsG_4; EIICB-Glc [KO:K02779] [EC:2.7.1.199]
NCTC11214_04534  ptsG_2; EIICBA-Glc [KO:K02791] [EC:2.7.1.199 2.7.1.208]
NCTC11214_05228  ptsG_6; EIICBA-Glc [KO:K02791] [EC:2.7.1.199 2.7.1.208]
NCTC11214_03635  ptsG_1; EIICBA-Glc [KO:K02791] [EC:2.7.1.199 2.7.1.208]
NCTC11214_02391  glcB; PTS system glucoside-specific EIICBA component [KO:K20118] [EC:2.7.1.199]
NCTC11214_01085  bglF_1; EIIBCA-Bgl [KO:K02753] [EC:2.7.1.-]
NCTC11214_01086  bglF_2; EIIBCA-Bgl [KO:K02753] [EC:2.7.1.-]
NCTC11214_01087  PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC [KO:K02753] [EC:2.7.1.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sof00020  Citrate cycle (TCA cycle)
sof00030  Pentose phosphate pathway
sof00500  Starch and sucrose metabolism
sof00620  Pyruvate metabolism
sof00640  Propanoate metabolism
sof00710  Carbon fixation by Calvin cycle
KO pathway
ko00010   
LinkDB

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