KEGG   PATHWAY: spaa00020
Entry
spaa00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Spathaspora passalidarum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
spaa00020  Citrate cycle (TCA cycle)
spaa00020

Module
spaa_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:spaa00020]
spaa_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:spaa00020]
spaa_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:spaa00020]
spaa_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:spaa00020]
spaa_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:spaa00020]
Other DBs
GO: 0006099
Organism
Spathaspora passalidarum [GN:spaa]
Gene
SPAPADRAFT_131550  PYC1; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
SPAPADRAFT_134214  LSC2; succinate--CoA ligase beta chain [KO:K01900] [EC:6.2.1.4 6.2.1.5]
SPAPADRAFT_145961  [KO:K00234] [EC:1.3.5.1]
SPAPADRAFT_54213  [KO:K01681] [EC:4.2.1.3]
SPAPADRAFT_57461  LAT1; dihydrolipoamide acetyltransferase component [KO:K00627] [EC:2.3.1.12]
SPAPADRAFT_57716  [KO:K01899] [EC:6.2.1.4 6.2.1.5]
SPAPADRAFT_58095  [KO:K00237]
SPAPADRAFT_58279  [KO:K00026] [EC:1.1.1.37]
SPAPADRAFT_58866  PDH1; hypothetical protein [KO:K00162] [EC:1.2.4.1]
SPAPADRAFT_58964  [KO:K00234] [EC:1.3.5.1]
SPAPADRAFT_59001  PDA1; alpha subunit of pyruvate dehydrogenase [KO:K00161] [EC:1.2.4.1]
SPAPADRAFT_59334  [KO:K00658] [EC:2.3.1.61]
SPAPADRAFT_59335  [KO:K00382] [EC:1.8.1.4]
SPAPADRAFT_59621  [KO:K00235] [EC:1.3.5.1]
SPAPADRAFT_59650  [KO:K01679] [EC:4.2.1.2]
SPAPADRAFT_59731  [KO:K01647] [EC:2.3.3.1]
SPAPADRAFT_59841  IDP2; hypothetical protein [KO:K00031] [EC:1.1.1.42]
SPAPADRAFT_59988  [KO:K00026] [EC:1.1.1.37]
SPAPADRAFT_60027  PCK1; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
SPAPADRAFT_60080  [KO:K00026] [EC:1.1.1.37]
SPAPADRAFT_60576  [KO:K00236]
SPAPADRAFT_60714  [KO:K00031] [EC:1.1.1.42]
SPAPADRAFT_60805  [KO:K00030] [EC:1.1.1.41]
SPAPADRAFT_61400  [KO:K00030] [EC:1.1.1.41]
SPAPADRAFT_62472  [KO:K01679] [EC:4.2.1.2]
SPAPADRAFT_63063  [KO:K00237]
SPAPADRAFT_67403  [KO:K00164] [EC:1.2.4.2]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
spaa00010  Glycolysis / Gluconeogenesis
spaa00053  Ascorbate and aldarate metabolism
spaa00061  Fatty acid biosynthesis
spaa00062  Fatty acid elongation
spaa00071  Fatty acid degradation
spaa00190  Oxidative phosphorylation
spaa00220  Arginine biosynthesis
spaa00250  Alanine, aspartate and glutamate metabolism
spaa00280  Valine, leucine and isoleucine degradation
spaa00350  Tyrosine metabolism
spaa00470  D-Amino acid metabolism
spaa00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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