KEGG   PATHWAY: spar00020
Entry
spar00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Saprolegnia parasitica
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
spar00020  Citrate cycle (TCA cycle)
spar00020

Module
spar_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:spar00020]
spar_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:spar00020]
spar_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:spar00020]
spar_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:spar00020]
Other DBs
GO: 0006099
Organism
Saprolegnia parasitica [GN:spar]
Gene
SPRG_13131  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
SPRG_01813  hypothetical protein [KO:K01648] [EC:2.3.3.8]
SPRG_09816  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
SPRG_01402  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
SPRG_04567  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
SPRG_21360  oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
SPRG_18396  hypothetical protein [KO:K00164] [EC:1.2.4.2]
SPRG_04149  oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
SPRG_03871  hypothetical protein [KO:K00658] [EC:2.3.1.61]
SPRG_04527  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
SPRG_09825  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
SPRG_12474  succinyl-CoA ligase subunit alpha [KO:K01899] [EC:6.2.1.4 6.2.1.5]
SPRG_09585  hypothetical protein [KO:K01900] [EC:6.2.1.4 6.2.1.5]
SPRG_13201  succinate dehydrogenase flavoprotein subunit [KO:K00234] [EC:1.3.5.1]
SPRG_14325  succinate dehydrogenase iron-sulfur subunit [KO:K00235] [EC:1.3.5.1]
SPRG_11501  hypothetical protein [KO:K00236]
SPRG_04463  hypothetical protein [KO:K00237]
SPRG_08452  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
SPRG_09101  hypothetical protein [KO:K00025] [EC:1.1.1.37]
SPRG_12496  malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
SPRG_00135  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
SPRG_11953  hypothetical protein [KO:K00161] [EC:1.2.4.1]
SPRG_00756  pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
SPRG_21178  hypothetical protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
spar00010  Glycolysis / Gluconeogenesis
spar00053  Ascorbate and aldarate metabolism
spar00061  Fatty acid biosynthesis
spar00062  Fatty acid elongation
spar00071  Fatty acid degradation
spar00190  Oxidative phosphorylation
spar00220  Arginine biosynthesis
spar00250  Alanine, aspartate and glutamate metabolism
spar00280  Valine, leucine and isoleucine degradation
spar00350  Tyrosine metabolism
spar00470  D-Amino acid metabolism
spar00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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