KEGG   PATHWAY: sphn00020
Entry
sphn00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Sphingobacterium sp. B29
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sphn00020  Citrate cycle (TCA cycle)
sphn00020

Module
sphn_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sphn00020]
sphn_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sphn00020]
sphn_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sphn00020]
sphn_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sphn00020]
Other DBs
GO: 0006099
Organism
Sphingobacterium sp. B29 [GN:sphn]
Gene
BV902_25020  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
BV902_15255  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
BV902_16360  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
BV902_16365  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
BV902_11095  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BV902_13965  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
BV902_24120  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BV902_24125  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BV902_06700  diapophytoene dehydrogenase [KO:K00658] [EC:2.3.1.61]
BV902_05470  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BV902_05485  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BV902_22315  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BV902_06235  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
BV902_05445  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
BV902_06260  propionyl-CoA--succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
BV902_04220  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BV902_15120  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BV902_04215  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BV902_15115  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BV902_04225  succinate dehydrogenase [KO:K00241]
BV902_15125  succinate dehydrogenase [KO:K00241]
BV902_26235  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BV902_24170  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BV902_10855  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
BV902_16345  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
BV902_03875  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
BV902_01155  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sphn00010  Glycolysis / Gluconeogenesis
sphn00053  Ascorbate and aldarate metabolism
sphn00061  Fatty acid biosynthesis
sphn00062  Fatty acid elongation
sphn00071  Fatty acid degradation
sphn00190  Oxidative phosphorylation
sphn00220  Arginine biosynthesis
sphn00250  Alanine, aspartate and glutamate metabolism
sphn00280  Valine, leucine and isoleucine degradation
sphn00350  Tyrosine metabolism
sphn00470  D-Amino acid metabolism
sphn00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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