KEGG   PATHWAY: spon00020
Entry
spon00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Flagellimonas maritima
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
spon00020  Citrate cycle (TCA cycle)
spon00020

Module
spon_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:spon00020]
spon_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:spon00020]
spon_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:spon00020]
spon_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:spon00020]
spon_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:spon00020]
Other DBs
GO: 0006099
Organism
Flagellimonas maritima [GN:spon]
Gene
HME9304_00773  gltA; Citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
HME9304_02550  acnA; Aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
HME9304_01134  Isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
HME9304_00015  idh1; Isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
HME9304_02062  ogdH; Oxoglutarate dehydrogenase (succinyl-transferring) [KO:K00164] [EC:1.2.4.2]
HME9304_02525  Dihydrolipoyllysine-residue acetyltransferase [KO:K00658] [EC:2.3.1.61]
HME9304_02063  dlsT; Dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
HME9304_02676  Glutathione-disulfide reductase [KO:K00382] [EC:1.8.1.4]
HME9304_03314  pdhD; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HME9304_03069  sucD; Succinate--CoA ligase (ADP-forming) [KO:K01902] [EC:6.2.1.5]
HME9304_00415  sucC; Succinate--CoA ligase (ADP-forming) [KO:K01903] [EC:6.2.1.5]
HME9304_01618  sdhA; Succinate dehydrogenase (quinone) [KO:K00239] [EC:1.3.5.1]
HME9304_01617  sdhB; Succinate dehydrogenase (quinone) [KO:K00240] [EC:1.3.5.1]
HME9304_01619  hypothetical protein [KO:K00241]
HME9304_02972  fumC; Fumarate hydratase [KO:K01679] [EC:4.2.1.2]
HME9304_00562  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HME9304_00293  accC; Acetyl-CoA carboxylase [KO:K01959] [EC:6.4.1.1]
HME9304_01112  pckA; Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
HME9304_02052  Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
HME9304_00862  pdhA; Pyruvate dehydrogenase (acetyl-transferring) [KO:K00161] [EC:1.2.4.1]
HME9304_02233  pdhB; Pyruvate dehydrogenase (acetyl-transferring) [KO:K00162] [EC:1.2.4.1]
HME9304_00861  dlaT; Dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
spon00010  Glycolysis / Gluconeogenesis
spon00053  Ascorbate and aldarate metabolism
spon00061  Fatty acid biosynthesis
spon00071  Fatty acid degradation
spon00190  Oxidative phosphorylation
spon00220  Arginine biosynthesis
spon00250  Alanine, aspartate and glutamate metabolism
spon00280  Valine, leucine and isoleucine degradation
spon00350  Tyrosine metabolism
spon00470  D-Amino acid metabolism
spon00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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