KEGG   PATHWAY: squ00030
Entry
squ00030                    Pathway                                
Name
Pentose phosphate pathway - Serratia quinivorans
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
squ00030  Pentose phosphate pathway
squ00030

Module
squ_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:squ00030]
squ_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:squ00030]
squ_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:squ00030]
squ_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:squ00030]
squ_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:squ00030]
squ_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:squ00030]
Other DBs
GO: 0006098
Organism
Serratia quinivorans [GN:squ]
Gene
E4343_18400  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
E4343_19400  glucose-6-phosphate isomerase [KO:K06859] [EC:5.3.1.9]
E4343_19405  cupin domain-containing protein [KO:K06859] [EC:5.3.1.9]
E4343_02230  zwf; glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
E4343_15670  NAD(P)-dependent oxidoreductase [KO:K19243] [EC:1.1.1.388]
E4343_09695  6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
E4343_18900  lactonase family protein [KO:K07404] [EC:3.1.1.31]
E4343_08090  gndA; NADP-dependent phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
E4343_17755  ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
E4343_20620  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
E4343_23290  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
E4343_13185  tal; transaldolase [KO:K00616] [EC:2.2.1.2]
E4343_23295  tal; transaldolase [KO:K00616] [EC:2.2.1.2]
E4343_20770  rpiA; ribose-5-phosphate isomerase RpiA [KO:K01807] [EC:5.3.1.6]
E4343_13335  deoC; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
E4343_07960  deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
E4343_16335  rbsK; ribokinase [KO:K00852] [EC:2.7.1.15]
E4343_20345  phosphopentomutase [KO:K01839] [EC:5.4.2.7]
E4343_13325  deoB; phosphopentomutase [KO:K01839] [EC:5.4.2.7]
E4343_14065  phnN; ribose 1,5-bisphosphokinase [KO:K05774] [EC:2.7.4.23]
E4343_06210  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
E4343_18290  phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
E4343_02235  bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
E4343_18285  bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
E4343_05775  GMC family oxidoreductase [KO:K19813] [EC:1.1.5.9]
E4343_04530  GMC family oxidoreductase [KO:K19813] [EC:1.1.5.9]
E4343_00525  glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase [KO:K00117] [EC:1.1.5.2]
E4343_20730  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
E4343_05535  GMC family oxidoreductase [KO:K06151] [EC:1.1.99.3]
E4343_06065  GMC family oxidoreductase [KO:K06151] [EC:1.1.99.3]
E4343_05540  gluconate 2-dehydrogenase subunit 3 family protein [KO:K06152] [EC:1.1.99.3]
E4343_06060  gluconate 2-dehydrogenase subunit 3 family protein [KO:K06152] [EC:1.1.99.3]
E4343_15985  ghrB; glyoxylate/hydroxypyruvate reductase GhrB [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
E4343_17505  gntK; gluconokinase [KO:K00851] [EC:2.7.1.12]
E4343_18300  gntK; gluconokinase [KO:K00851] [EC:2.7.1.12]
E4343_15975  sugar kinase [KO:K00874] [EC:2.7.1.45]
E4343_17095  sugar kinase [KO:K00874] [EC:2.7.1.45]
E4343_19395  PTS system mannose/fructose/sorbose family transporter subunit IID [KO:K17467]
E4343_22870  fbaB; class I fructose-bisphosphate aldolase [KO:K11645] [EC:4.1.2.13]
E4343_04880  class II fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
E4343_20670  fbaA; class II fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
E4343_11295  ketose 1,6-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
E4343_14345  class 1 fructose-bisphosphatase [KO:K03841] [EC:3.1.3.11]
E4343_16810  glpX; class II fructose-bisphosphatase [KO:K02446] [EC:3.1.3.11]
E4343_16770  ATP-dependent 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
E4343_04865  permease [KO:K00850] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
squ00010  Glycolysis / Gluconeogenesis
squ00040  Pentose and glucuronate interconversions
squ00052  Galactose metabolism
squ00230  Purine metabolism
squ00240  Pyrimidine metabolism
squ00340  Histidine metabolism
squ00630  Glyoxylate and dicarboxylate metabolism
squ00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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