KEGG   PATHWAY: srn00020
Entry
srn00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Streptomyces rubrolavendulae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
srn00020  Citrate cycle (TCA cycle)
srn00020

Module
srn_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:srn00020]
srn_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:srn00020]
srn_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:srn00020]
srn_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:srn00020]
Other DBs
GO: 0006099
Organism
Streptomyces rubrolavendulae [GN:srn]
Gene
A4G23_01363  pdhD; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A4G23_01366  aceE_1; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
A4G23_01514  aceE_2; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
A4G23_01787  gltA2; Citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
A4G23_02343  citA; Citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
A4G23_02801  lpdC; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A4G23_03279  korB; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
A4G23_03280  korA; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
A4G23_03479  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
A4G23_03480  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
A4G23_03498  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
A4G23_03520  sdhB; Succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
A4G23_03521  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
A4G23_03522  [KO:K00242]
A4G23_03523  [KO:K00241]
A4G23_03653  pckG; Phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
A4G23_03695  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
A4G23_03697  fumB; Fumarate hydratase class I, anaerobic [KO:K01676] [EC:4.2.1.2]
A4G23_03892  kgd; Multifunctional 2-oxoglutarate metabolism enzyme [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
A4G23_04626  acnA; Aconitate hydratase [KO:K27802]
A4G23_05108  icd; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
A4G23_05233  [KO:K00241]
A4G23_05234  frdA; Fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
A4G23_05235  frdB; Fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
srn00010  Glycolysis / Gluconeogenesis
srn00053  Ascorbate and aldarate metabolism
srn00061  Fatty acid biosynthesis
srn00071  Fatty acid degradation
srn00190  Oxidative phosphorylation
srn00220  Arginine biosynthesis
srn00250  Alanine, aspartate and glutamate metabolism
srn00280  Valine, leucine and isoleucine degradation
srn00350  Tyrosine metabolism
srn00470  D-Amino acid metabolism
srn00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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