KEGG   PATHWAY: srx00020
Entry
srx00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Sinocyclocheilus rhinocerous
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
srx00020  Citrate cycle (TCA cycle)
srx00020

Module
srx_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:srx00020]
srx_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:srx00020]
srx_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:srx00020]
srx_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:srx00020]
srx_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:srx00020]
Other DBs
GO: 0006099
Organism
Sinocyclocheilus rhinocerous [GN:srx]
Gene
107707042  citrate synthase, mitochondrial isoform X1 [KO:K01647] [EC:2.3.3.1]
107715034  citrate synthase, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
107755575  ATP-citrate synthase-like isoform X1 [KO:K01648] [EC:2.3.3.8]
107729187  ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
107727950  ATP-citrate synthase-like isoform X1 [KO:K01648] [EC:2.3.3.8]
107709087  cytoplasmic aconitate hydratase-like [KO:K01681] [EC:4.2.1.3]
107731401  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
107728659  aco1; cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
107734200  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
107715227  isocitrate dehydrogenase [NADP], mitochondrial-like [KO:K00031] [EC:1.1.1.42]
107714782  isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
107733642  idh1; isocitrate dehydrogenase [NADP] cytoplasmic isoform X1 [KO:K00031] [EC:1.1.1.42]
107738520  isocitrate dehydrogenase [NADP] cytoplasmic-like [KO:K00031] [EC:1.1.1.42]
107716150  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
107737522  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
107737870  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
107752321  isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
107757767  isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
107736889  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
107722993  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
107707496  2-oxoglutarate dehydrogenase-like, mitochondrial [KO:K00164] [EC:1.2.4.2]
107756845  2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
107714098  2-oxoglutarate dehydrogenase, mitochondrial-like isoform X1 [KO:K00164] [EC:1.2.4.2]
107724251  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
107749530  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
107752310  dld; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
107757756  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
107730526  succinyl-CoA ligase subunit alpha, mitochondrial isoform X1 [KO:K01899] [EC:6.2.1.4 6.2.1.5]
107746879  succinyl-CoA ligase subunit alpha, mitochondrial-like [KO:K01899] [EC:6.2.1.4 6.2.1.5]
107706648  succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
107705569  succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
107729402  succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial-like isoform X1 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
107753779  succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
107729872  LOW QUALITY PROTEIN: succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
107751682  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
107737535  sdhb; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
107748845  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
107737935  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
107721774  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
107749161  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
107709126  succinate dehydrogenase [ubiquinone] cytochrome b small subunit B, mitochondrial [KO:K00237]
107717883  succinate dehydrogenase [ubiquinone] cytochrome b small subunit A, mitochondrial-like [KO:K00237]
107717284  succinate dehydrogenase [ubiquinone] cytochrome b small subunit B, mitochondrial-like [KO:K00237]
107722759  LOW QUALITY PROTEIN: succinate dehydrogenase [ubiquinone] cytochrome b small subunit A, mitochondrial-like [KO:K00237]
107746762  fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
107715342  fumarate hydratase, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
107744659  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
107729383  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
107757024  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
107728883  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
107734470  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
107756168  pyruvate carboxylase, mitochondrial-like [KO:K01958] [EC:6.4.1.1]
107715262  pyruvate carboxylase, mitochondrial-like [KO:K01958] [EC:6.4.1.1]
107721657  pyruvate carboxylase, mitochondrial-like [KO:K01958] [EC:6.4.1.1]
107712165  pyruvate carboxylase, mitochondrial-like [KO:K01958] [EC:6.4.1.1]
107754213  phosphoenolpyruvate carboxykinase [GTP], mitochondrial-like [KO:K01596] [EC:4.1.1.32]
107725708  phosphoenolpyruvate carboxykinase, cytosolic [GTP]-like [KO:K01596] [EC:4.1.1.32]
107758197  pck1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
107705257  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like isoform X1 [KO:K00161] [EC:1.2.4.1]
107726384  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like isoform X1 [KO:K00161] [EC:1.2.4.1]
107744478  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
107721006  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
107745408  pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
107718949  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
107731458  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
srx00010  Glycolysis / Gluconeogenesis
srx00053  Ascorbate and aldarate metabolism
srx00061  Fatty acid biosynthesis
srx00062  Fatty acid elongation
srx00071  Fatty acid degradation
srx00190  Oxidative phosphorylation
srx00220  Arginine biosynthesis
srx00250  Alanine, aspartate and glutamate metabolism
srx00280  Valine, leucine and isoleucine degradation
srx00350  Tyrosine metabolism
srx00470  D-Amino acid metabolism
srx00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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