KEGG   PATHWAY: sund03030
Entry
sund03030                   Pathway                                
Name
DNA replication - Sceloporus undulatus (fence lizard)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
sund03030  DNA replication
sund03030

Organism
Sceloporus undulatus (fence lizard) [GN:sund]
Gene
121914582  PRIM2; DNA primase large subunit [KO:K02685]
121915108  POLA2; DNA polymerase alpha subunit B isoform X1 [KO:K02321]
121915814  RNASEH2C; ribonuclease H2 subunit C isoform X1 [KO:K10745]
121916290  RPA2; replication protein A 32 kDa subunit [KO:K10739]
121916528  RFC5; replication factor C subunit 5 [KO:K10756]
121916708  POLE; DNA polymerase epsilon catalytic subunit A isoform X1 [KO:K02324] [EC:2.7.7.7]
121917058  RPA1; replication protein A 70 kDa DNA-binding subunit [KO:K07466]
121917135  RFC2; replication factor C subunit 2 [KO:K10755]
121917909  RNASEH1; ribonuclease H1 isoform X1 [KO:K03469] [EC:3.1.26.4]
121918320  MCM6; DNA replication licensing factor MCM6 [KO:K02542] [EC:5.6.2.3]
121919310  FEN1; flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
121919586  RNASEH2B; ribonuclease H2 subunit B isoform X1 [KO:K10744]
121920453  PRIM1; LOW QUALITY PROTEIN: DNA primase small subunit [KO:K02684] [EC:2.7.7.102]
121921764  RNASEH2A; ribonuclease H2 subunit A isoform X1 [KO:K10743] [EC:3.1.26.4]
121923265  MCM3; DNA replication licensing factor MCM3 [KO:K02541] [EC:5.6.2.3]
121924062  MCM2; DNA replication licensing factor MCM2 [KO:K02540] [EC:5.6.2.3]
121925370  RFC3; replication factor C subunit 3 [KO:K10756]
121925751  POLA1; LOW QUALITY PROTEIN: DNA polymerase alpha catalytic subunit [KO:K02320] [EC:2.7.7.7]
121926144  POLD3; DNA polymerase delta subunit 3 isoform X1 [KO:K03504]
121926395  DNA2; DNA replication ATP-dependent helicase/nuclease DNA2 isoform X1 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
121927870  MCM7; DNA replication licensing factor MCM7 [KO:K02210] [EC:5.6.2.3]
121929969  MCM4; DNA replication licensing factor MCM4 isoform X1 [KO:K02212] [EC:5.6.2.3]
121930110  [KO:K04799] [EC:3.1.-.-]
121930438  RFC1; replication factor C subunit 1 isoform X1 [KO:K10754]
121931720  POLD4; DNA polymerase delta subunit 4 isoform X1 [KO:K03505]
121931938  MCM5; DNA replication licensing factor MCM5 [KO:K02209] [EC:5.6.2.3]
121932204  SSBP1; single-stranded DNA-binding protein, mitochondrial [KO:K03111]
121932432  RPA3; replication protein A 14 kDa subunit [KO:K10740]
121933572  POLD2; DNA polymerase delta subunit 2 [KO:K02328]
121935352  POLD1; LOW QUALITY PROTEIN: DNA polymerase delta catalytic subunit [KO:K02327] [EC:2.7.7.7]
121935745  LIG1; DNA ligase 1 isoform X1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
121935776  PCNA; proliferating cell nuclear antigen [KO:K04802]
121936171  POLE3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
121936904  POLE4; DNA polymerase epsilon subunit 4 [KO:K03506] [EC:2.7.7.7]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

DBGET integrated database retrieval system