KEGG   PATHWAY: sxn00020
Entry
sxn00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Streptomyces xanthii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sxn00020  Citrate cycle (TCA cycle)
sxn00020

Module
sxn_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sxn00020]
sxn_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sxn00020]
sxn_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sxn00020]
sxn_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sxn00020]
sxn_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sxn00020]
Other DBs
GO: 0006099
Organism
Streptomyces xanthii [GN:sxn]
Gene
IAG42_15410  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
IAG42_22985  citrate synthase [KO:K01647] [EC:2.3.3.1]
IAG42_08545  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
IAG42_08550  helix-turn-helix domain-containing protein [KO:K01647] [EC:2.3.3.1]
IAG42_08140  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
IAG42_32010  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
IAG42_11360  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
IAG42_25740  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
IAG42_04755  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
IAG42_22310  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
IAG42_14610  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
IAG42_22315  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
IAG42_14615  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
IAG42_05900  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
IAG42_13690  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
IAG42_05905  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
IAG42_13695  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
IAG42_04160  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
IAG42_12245  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
IAG42_13425  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
IAG42_04155  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
IAG42_12250  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
IAG42_13430  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
IAG42_04165  succinate dehydrogenase [KO:K00241]
IAG42_13415  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
IAG42_13420  succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
IAG42_12520  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
IAG42_12530  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
IAG42_13630  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
IAG42_02345  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
IAG42_12855  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
IAG42_24645  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
IAG42_25725  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
IAG42_25735  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sxn00010  Glycolysis / Gluconeogenesis
sxn00053  Ascorbate and aldarate metabolism
sxn00061  Fatty acid biosynthesis
sxn00071  Fatty acid degradation
sxn00190  Oxidative phosphorylation
sxn00220  Arginine biosynthesis
sxn00250  Alanine, aspartate and glutamate metabolism
sxn00280  Valine, leucine and isoleucine degradation
sxn00350  Tyrosine metabolism
sxn00470  D-Amino acid metabolism
sxn00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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