KEGG   PATHWAY: sxn00030
Entry
sxn00030                    Pathway                                
Name
Pentose phosphate pathway - Streptomyces xanthii
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sxn00030  Pentose phosphate pathway
sxn00030

Module
sxn_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:sxn00030]
sxn_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:sxn00030]
sxn_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:sxn00030]
sxn_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:sxn00030]
sxn_M00345  Formaldehyde assimilation, ribulose monophosphate pathway [PATH:sxn00030]
Other DBs
GO: 0006098
Organism
Streptomyces xanthii [GN:sxn]
Gene
IAG42_27230  pgi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
IAG42_28610  pgi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
IAG42_27250  glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
IAG42_28600  glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
IAG42_33900  zwf; glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
IAG42_27240  pgl; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
IAG42_17810  gnd; decarboxylating 6-phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
IAG42_28615  gnd; decarboxylating 6-phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
IAG42_04480  gndA; NADP-dependent phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
IAG42_29770  rpe; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
IAG42_27260  transketolase [KO:K00615] [EC:2.2.1.1]
IAG42_28590  transketolase [KO:K00615] [EC:2.2.1.1]
IAG42_06275  transketolase [KO:K00615] [EC:2.2.1.1]
IAG42_27255  tal; transaldolase [KO:K00616] [EC:2.2.1.2]
IAG42_28595  tal; transaldolase [KO:K00616] [EC:2.2.1.2]
IAG42_23520  ribose-5-phosphate isomerase [KO:K01808] [EC:5.3.1.6]
IAG42_32240  orotidine 5'-phosphate decarboxylase [KO:K08093] [EC:4.1.2.43]
IAG42_32235  hxlB; 6-phospho-3-hexuloisomerase [KO:K08094] [EC:5.3.1.27]
IAG42_13130  deoC; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
IAG42_22925  ribokinase [KO:K00852] [EC:2.7.1.15]
IAG42_01900  alpha-D-glucose phosphate-specific phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
IAG42_20685  ribose-phosphate diphosphokinase [KO:K00948] [EC:2.7.6.1]
IAG42_20185  bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
IAG42_25160  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
IAG42_13440  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
IAG42_28570  gluconokinase [KO:K00851] [EC:2.7.1.12]
IAG42_20175  sugar kinase [KO:K00874] [EC:2.7.1.45]
IAG42_32245  sugar kinase [KO:K00874] [EC:2.7.1.45]
IAG42_12805  sugar kinase [KO:K00874] [EC:2.7.1.45]
IAG42_18800  fbaA; class II fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
IAG42_31860  class II fructose-bisphosphate aldolase family protein [KO:K01624] [EC:4.1.2.13]
IAG42_12505  glpX; class II fructose-bisphosphatase [KO:K02446] [EC:3.1.3.11]
IAG42_00800  1-phosphofructokinase family hexose kinase [KO:K16370] [EC:2.7.1.11]
IAG42_30870  6-phosphofructokinase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
IAG42_10770  6-phosphofructokinase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
sxn00010  Glycolysis / Gluconeogenesis
sxn00040  Pentose and glucuronate interconversions
sxn00052  Galactose metabolism
sxn00230  Purine metabolism
sxn00240  Pyrimidine metabolism
sxn00340  Histidine metabolism
sxn00630  Glyoxylate and dicarboxylate metabolism
sxn00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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