KEGG   PATHWAY: tbw00020
Entry
tbw00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Trueperella bialowiezensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tbw00020  Citrate cycle (TCA cycle)
tbw00020

Module
tbw_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:tbw00020]
tbw_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:tbw00020]
tbw_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:tbw00020]
tbw_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tbw00020]
Other DBs
GO: 0006099
Organism
Trueperella bialowiezensis [GN:tbw]
Gene
NCTC13354_00643  gltA2; Citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
NCTC13354_00185  acnA; Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
NCTC13354_00659  icd; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
NCTC13354_01464  kgd; 2-oxoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
NCTC13354_00225  pdhD; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NCTC13354_00466  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
NCTC13354_00467  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
NCTC13354_00494  frdA_1; Fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
NCTC13354_01535  frdA_2; Fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
NCTC13354_00493  frdB_1; Fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
NCTC13354_01536  frdB_2; Fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
NCTC13354_00495  Succinate dehydrogenase/fumarate reductase, cytochrome b subunit [KO:K00241]
NCTC13354_01534  succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family [KO:K00241]
NCTC13354_00479  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
NCTC13354_01638  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NCTC13354_01632  pckG; Phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
NCTC13354_00244  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
NCTC13354_00226  dlaT; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tbw00010  Glycolysis / Gluconeogenesis
tbw00061  Fatty acid biosynthesis
tbw00071  Fatty acid degradation
tbw00190  Oxidative phosphorylation
tbw00220  Arginine biosynthesis
tbw00250  Alanine, aspartate and glutamate metabolism
tbw00280  Valine, leucine and isoleucine degradation
tbw00350  Tyrosine metabolism
tbw00470  D-Amino acid metabolism
tbw00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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