KEGG   PATHWAY: tci00020
Entry
tci00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Tatumella citrea
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tci00020  Citrate cycle (TCA cycle)
tci00020

Module
tci_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:tci00020]
tci_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:tci00020]
tci_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:tci00020]
tci_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:tci00020]
tci_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tci00020]
Other DBs
GO: 0006099
Organism
Tatumella citrea [GN:tci]
Gene
A7K98_06195  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
A7K98_10200  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
A7K98_16060  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
A7K98_07740  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
A7K98_06220  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
A7K98_06225  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
A7K98_16075  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A7K98_06235  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
A7K98_06230  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
A7K98_06210  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
A7K98_06215  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
A7K98_06200  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
A7K98_06205  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
A7K98_02175  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
A7K98_08855  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
A7K98_19640  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
A7K98_09065  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
A7K98_00320  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
A7K98_16085  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
A7K98_16080  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tci00010  Glycolysis / Gluconeogenesis
tci00053  Ascorbate and aldarate metabolism
tci00061  Fatty acid biosynthesis
tci00071  Fatty acid degradation
tci00190  Oxidative phosphorylation
tci00220  Arginine biosynthesis
tci00250  Alanine, aspartate and glutamate metabolism
tci00280  Valine, leucine and isoleucine degradation
tci00350  Tyrosine metabolism
tci00470  D-Amino acid metabolism
tci00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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