KEGG   PATHWAY: tfi00020
Entry
tfi00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Tenacibaculum finnmarkense
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tfi00020  Citrate cycle (TCA cycle)
tfi00020

Module
tfi_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:tfi00020]
tfi_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:tfi00020]
tfi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:tfi00020]
tfi_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:tfi00020]
tfi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tfi00020]
Other DBs
GO: 0006099
Organism
Tenacibaculum finnmarkense [GN:tfi]
Gene
PJJ26_01935  [KO:K00164] [EC:1.2.4.2]
PJJ26_01940  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
PJJ26_03775  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
PJJ26_04445  [KO:K01647] [EC:2.3.3.1]
PJJ26_04795  [KO:K00031] [EC:1.1.1.42]
PJJ26_04900  [KO:K00658] [EC:2.3.1.61]
PJJ26_04960  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
PJJ26_05360  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
PJJ26_06155  [KO:K01682] [EC:4.2.1.3 4.2.1.99]
PJJ26_06160  [KO:K27802]
PJJ26_08665  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PJJ26_10510  [KO:K01958] [EC:6.4.1.1]
PJJ26_10525  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
PJJ26_10685  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
PJJ26_10690  [KO:K00627] [EC:2.3.1.12]
PJJ26_10955  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PJJ26_11205  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
PJJ26_12190  [KO:K00162] [EC:1.2.4.1]
PJJ26_13280  [KO:K00240] [EC:1.3.5.1]
PJJ26_13285  [KO:K00239] [EC:1.3.5.1]
PJJ26_13290  [KO:K00241]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tfi00010  Glycolysis / Gluconeogenesis
tfi00053  Ascorbate and aldarate metabolism
tfi00061  Fatty acid biosynthesis
tfi00071  Fatty acid degradation
tfi00190  Oxidative phosphorylation
tfi00220  Arginine biosynthesis
tfi00250  Alanine, aspartate and glutamate metabolism
tfi00280  Valine, leucine and isoleucine degradation
tfi00350  Tyrosine metabolism
tfi00470  D-Amino acid metabolism
tfi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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