KEGG   PATHWAY: this00020
Entry
this00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Candidatus Thiothrix singaporensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
this00020  Citrate cycle (TCA cycle)
this00020

Module
this_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:this00020]
this_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:this00020]
Other DBs
GO: 0006099
Organism
Candidatus Thiothrix singaporensis [GN:this]
Gene
HZT40_08365  citrate synthase [KO:K01647] [EC:2.3.3.1]
HZT40_08360  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
HZT40_06755  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HZT40_08605  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HZT40_05120  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
HZT40_05690  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
HZT40_08385  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
HZT40_18165  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HZT40_08380  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HZT40_05670  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
HZT40_05665  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
HZT40_05680  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
HZT40_05570  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
HZT40_08885  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
HZT40_13885  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
HZT40_06605  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
HZT40_07175  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
HZT40_18175  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
HZT40_07375  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
HZT40_18170  dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
HZT40_18150  2-oxoacid:acceptor oxidoreductase family protein [KO:K00169] [EC:1.2.7.1]
HZT40_19140  2-oxoacid:acceptor oxidoreductase family protein [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
this00010  Glycolysis / Gluconeogenesis
this00053  Ascorbate and aldarate metabolism
this00061  Fatty acid biosynthesis
this00071  Fatty acid degradation
this00190  Oxidative phosphorylation
this00220  Arginine biosynthesis
this00250  Alanine, aspartate and glutamate metabolism
this00280  Valine, leucine and isoleucine degradation
this00350  Tyrosine metabolism
this00470  D-Amino acid metabolism
this00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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