KEGG   PATHWAY: thw00030
Entry
thw00030                    Pathway                                
Name
Pentose phosphate pathway - Thioclava nitratireducens
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
thw00030  Pentose phosphate pathway
thw00030

Module
thw_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:thw00030]
thw_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:thw00030]
thw_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:thw00030]
thw_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:thw00030]
Other DBs
GO: 0006098
Organism
Thioclava nitratireducens [GN:thw]
Gene
BMG03_14095  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
BMG03_14105  glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
BMG03_14100  6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
BMG03_05920  phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) [KO:K00033] [EC:1.1.1.44 1.1.1.343]
BMG03_10915  ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
BMG03_07265  transketolase [KO:K00615] [EC:2.2.1.1]
BMG03_00055  transketolase [KO:K00615] [EC:2.2.1.1]
BMG03_00060  transketolase [KO:K00615] [EC:2.2.1.1]
BMG03_00155  transketolase [KO:K00615] [EC:2.2.1.1]
BMG03_10880  transketolase [KO:K00615] [EC:2.2.1.1]
BMG03_18150  fructose-6-phosphate aldolase [KO:K00616] [EC:2.2.1.2]
BMG03_04465  fructose-6-phosphate aldolase [KO:K00616] [EC:2.2.1.2]
BMG03_07150  ribose 5-phosphate isomerase A [KO:K01807] [EC:5.3.1.6]
BMG03_14755  deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
BMG03_14760  ribokinase [KO:K00852] [EC:2.7.1.15]
BMG03_17325  phosphopentomutase [KO:K01839] [EC:5.4.2.7]
BMG03_10855  alpha-D-glucose phosphate-specific phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
BMG03_07310  phosphoribosylpyrophosphate synthetase [KO:K00948] [EC:2.7.6.1]
BMG03_06050  hypothetical protein [KO:K00851] [EC:2.7.1.12]
BMG03_17765  hypothetical protein [KO:K00874] [EC:2.7.1.45]
BMG03_15620  hypothetical protein [KO:K00874] [EC:2.7.1.45]
BMG03_14445  hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
BMG03_12010  fructose bisphosphate aldolase [KO:K01623] [EC:4.1.2.13]
BMG03_00135  fructose-1,6-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
BMG03_10890  fructose-1,6-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
BMG03_00140  fructose-bisphosphatase [KO:K03841] [EC:3.1.3.11]
BMG03_06555  fructose-bisphosphatase [KO:K03841] [EC:3.1.3.11]
BMG03_10870  fructose-bisphosphatase [KO:K03841] [EC:3.1.3.11]
BMG03_06960  fructose-bisphosphatase, class II [KO:K11532] [EC:3.1.3.11 3.1.3.37]
BMG03_06925  sugar kinase [KO:K16370] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
thw00010  Glycolysis / Gluconeogenesis
thw00040  Pentose and glucuronate interconversions
thw00052  Galactose metabolism
thw00230  Purine metabolism
thw00240  Pyrimidine metabolism
thw00340  Histidine metabolism
thw00630  Glyoxylate and dicarboxylate metabolism
thw00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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