KEGG   PATHWAY: tib00020
Entry
tib00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Thiomicrorhabdus immobilis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tib00020  Citrate cycle (TCA cycle)
tib00020

Module
tib_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:tib00020]
tib_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tib00020]
Other DBs
GO: 0006099
Organism
Thiomicrorhabdus immobilis [GN:tib]
Gene
THMIRHAM_04120  [KO:K01659] [EC:2.3.3.5]
THMIRHAM_07290  [KO:K00382] [EC:1.8.1.4]
THMIRHAM_09220  fumC-2; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
THMIRHAM_10270  icd; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
THMIRHAM_10540  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
THMIRHAM_10550  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
THMIRHAM_10820  acnB; aconitate hydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
THMIRHAM_13150  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
THMIRHAM_13160  [KO:K00627] [EC:2.3.1.12]
THMIRHAM_13170  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
THMIRHAM_13340  sucD; succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
THMIRHAM_13350  sucC; succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
THMIRHAM_19380  mqo; putative malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tib00010  Glycolysis / Gluconeogenesis
tib00061  Fatty acid biosynthesis
tib00071  Fatty acid degradation
tib00190  Oxidative phosphorylation
tib00220  Arginine biosynthesis
tib00250  Alanine, aspartate and glutamate metabolism
tib00280  Valine, leucine and isoleucine degradation
tib00350  Tyrosine metabolism
tib00470  D-Amino acid metabolism
tib00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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