KEGG   PATHWAY: trb00020
Entry
trb00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Tardiphaga robiniae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
trb00020  Citrate cycle (TCA cycle)
trb00020

Module
trb_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:trb00020]
trb_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:trb00020]
trb_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:trb00020]
trb_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:trb00020]
trb_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:trb00020]
Other DBs
GO: 0006099
Organism
Tardiphaga robiniae [GN:trb]
Gene
HB776_02320  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
HB776_02590  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
HB776_02600  [KO:K00164] [EC:1.2.4.2]
HB776_06605  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
HB776_06850  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
HB776_06855  [KO:K00162] [EC:1.2.4.1]
HB776_06865  [KO:K00627] [EC:2.3.1.12]
HB776_06875  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HB776_08585  [KO:K01679] [EC:4.2.1.2]
HB776_10765  [KO:K01682] [EC:4.2.1.3 4.2.1.99]
HB776_13665  [KO:K00031] [EC:1.1.1.42]
HB776_14260  [KO:K01676] [EC:4.2.1.2]
HB776_23535  acnA; aconitate hydratase AcnA [KO:K27802]
HB776_23585  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HB776_23590  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
HB776_23595  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
HB776_23620  [KO:K00164] [EC:1.2.4.2]
HB776_23625  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
HB776_23635  [KO:K00382] [EC:1.8.1.4]
HB776_25100  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
HB776_25105  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
HB776_25110  [KO:K00239] [EC:1.3.5.1]
HB776_25115  [KO:K00240] [EC:1.3.5.1]
HB776_27125  [KO:K01610] [EC:4.1.1.49]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
trb00010  Glycolysis / Gluconeogenesis
trb00053  Ascorbate and aldarate metabolism
trb00061  Fatty acid biosynthesis
trb00071  Fatty acid degradation
trb00190  Oxidative phosphorylation
trb00220  Arginine biosynthesis
trb00250  Alanine, aspartate and glutamate metabolism
trb00280  Valine, leucine and isoleucine degradation
trb00350  Tyrosine metabolism
trb00470  D-Amino acid metabolism
trb00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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