KEGG   PATHWAY: tsr00020
Entry
tsr00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Thamnophis sirtalis (common garter snake)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tsr00020  Citrate cycle (TCA cycle)
tsr00020

Module
tsr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:tsr00020]
tsr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:tsr00020]
tsr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tsr00020]
Other DBs
GO: 0006099
Organism
Thamnophis sirtalis (common garter snake) [GN:tsr]
Gene
106537812  ACO2; aconitate hydratase, mitochondrial isoform X1 [KO:K01681] [EC:4.2.1.3]
106538254  ACLY; ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
106538870  FH; fumarate hydratase, mitochondrial isoform X1 [KO:K01679] [EC:4.2.1.2]
106538920  IDH3B; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [KO:K00030] [EC:1.1.1.41]
106539096  IDH2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
106539645  IDH3G; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
106539785  SDHB; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
106540961  [KO:K01596] [EC:4.1.1.32]
106541542  MDH1; malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
106541637  DLST; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
106543134  [KO:K01900] [EC:6.2.1.4 6.2.1.5]
106543710  SUCLA2; succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
106544437  CS; citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
106546934  ACO1; cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
106548328  SDHA; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
106548931  IDH3A; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
106549627  MDH2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
106550844  PDHB; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
106551227  SUCLG2; succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
106551437  PCK2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial [KO:K01596] [EC:4.1.1.32]
106552172  PC; pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
106552462  DLAT; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
106553094  [KO:K00382] [EC:1.8.1.4]
106553977  SDHC; succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
106554165  PDHA1; pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial [KO:K00161] [EC:1.2.4.1]
106554888  [KO:K00164] [EC:1.2.4.2]
106557321  OGDH; 2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tsr00010  Glycolysis / Gluconeogenesis
tsr00053  Ascorbate and aldarate metabolism
tsr00061  Fatty acid biosynthesis
tsr00062  Fatty acid elongation
tsr00071  Fatty acid degradation
tsr00190  Oxidative phosphorylation
tsr00220  Arginine biosynthesis
tsr00250  Alanine, aspartate and glutamate metabolism
tsr00280  Valine, leucine and isoleucine degradation
tsr00350  Tyrosine metabolism
tsr00470  D-Amino acid metabolism
tsr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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