KEGG   PATHWAY: vaz00010
Entry
vaz00010                    Pathway                                
Name
Glycolysis / Gluconeogenesis - Variovorax sp. PAMC26660
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
vaz00010  Glycolysis / Gluconeogenesis
vaz00010

Module
vaz_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:vaz00010]
vaz_M00002  Glycolysis, core module involving three-carbon compounds [PATH:vaz00010]
vaz_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:vaz00010]
vaz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:vaz00010]
Other DBs
GO: 0006096 0006094
Organism
Variovorax sp. PAMC26660 [GN:vaz]
Gene
H7F35_00085  [KO:K01803] [EC:5.3.1.1]
H7F35_02045  [KO:K03841] [EC:3.1.3.11]
H7F35_03075  [KO:K00128] [EC:1.2.1.3]
H7F35_04770  gpmA; 2,3-diphosphoglycerate-dependent phosphoglycerate mutase [KO:K01834] [EC:5.4.2.11]
H7F35_06215  [KO:K00175] [EC:1.2.7.3 1.2.7.11]
H7F35_06220  [KO:K00174] [EC:1.2.7.3 1.2.7.11]
H7F35_06375  [KO:K15634] [EC:5.4.2.11]
H7F35_06985  [KO:K00128] [EC:1.2.1.3]
H7F35_07710  [KO:K24012]
H7F35_10520  [KO:K01624] [EC:4.1.2.13]
H7F35_10540  pyk; pyruvate kinase [KO:K00873] [EC:2.7.1.40]
H7F35_10545  [KO:K00927] [EC:2.7.2.3]
H7F35_10770  mdeB; alpha-ketoglutarate dehydrogenase [KO:K00163] [EC:1.2.4.1]
H7F35_11390  gap; type I glyceraldehyde-3-phosphate dehydrogenase [KO:K00134] [EC:1.2.1.12]
H7F35_12880  [KO:K01596] [EC:4.1.1.32]
H7F35_14780  [KO:K21071] [EC:2.7.1.11 2.7.1.90]
H7F35_17135  [KO:K15634] [EC:5.4.2.11]
H7F35_17205  [KO:K00845] [EC:2.7.1.2]
H7F35_17540  [KO:K01785] [EC:5.1.3.3]
H7F35_18010  pgi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
H7F35_18430  [KO:K01792] [EC:5.1.3.15]
H7F35_21830  [KO:K00128] [EC:1.2.1.3]
H7F35_22540  [KO:K00121] [EC:1.1.1.284 1.1.1.1]
H7F35_23425  ppsA; phosphoenolpyruvate synthase [KO:K01007] [EC:2.7.9.2]
H7F35_23775  eno; phosphopyruvate hydratase [KO:K01689] [EC:4.2.1.11]
H7F35_24860  [KO:K00138] [EC:1.2.1.-]
H7F35_26660  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
H7F35_26665  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
H7F35_26675  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
H7F35_26730  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
H7F35_27510  [KO:K00128] [EC:1.2.1.3]
H7F35_30455  [KO:K01835] [EC:5.4.2.2]
H7F35_30895  [KO:K01623] [EC:4.1.2.13]
H7F35_33115  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
vaz00020  Citrate cycle (TCA cycle)
vaz00030  Pentose phosphate pathway
vaz00500  Starch and sucrose metabolism
vaz00620  Pyruvate metabolism
vaz00640  Propanoate metabolism
vaz00710  Carbon fixation by Calvin cycle
KO pathway
ko00010   

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