KEGG   PATHWAY: vfi03430
Entry
vfi03430                    Pathway                                
Name
Mismatch repair - Aliivibrio fischeri ES114
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
vfi03430  Mismatch repair
vfi03430

Other DBs
GO: 0006298
Organism
Aliivibrio fischeri ES114 [GN:vfi]
Gene
VF_0010  dnaN; DNA polymerase III, beta subunit [KO:K02338] [EC:2.7.7.7]
VF_0068  uvrD; DNA-dependent ATPase I and helicase II [KO:K03657] [EC:5.6.2.4]
VF_0353  ssb; single-stranded DNA-binding protein [KO:K03111]
VF_0412  holC; DNA polymerase III, chi subunit [KO:K02339] [EC:2.7.7.7]
VF_0450  recJ; ssDNA exonuclease, 5' --> 3'-specific [KO:K07462] [EC:3.1.-.-]
VF_0455  mutH; methyl-directed mismatch repair protein [KO:K03573]
VF_0498  holD; DNA polymerase III, psi subunit [KO:K02344] [EC:2.7.7.7]
VF_0534  mutS; methyl-directed mismatch repair protein [KO:K03555]
VF_0636  xseA; exonuclease VII, large subunit [KO:K03601] [EC:3.1.11.6]
VF_0713  xseB; exodeoxyribonuclease VII, small subunit [KO:K03602] [EC:3.1.11.6]
VF_0751  holA; DNA polymerase III, delta subunit [KO:K02340] [EC:2.7.7.7]
VF_1482  sbcB; exonuclease I [KO:K01141] [EC:3.1.11.1]
VF_1687  dnaX; DNA polymerase III/DNA elongation factor III, tau and gamma subunits [KO:K02343] [EC:2.7.7.7]
VF_1734  holB; DNA polymerase III, delta prime subunit [KO:K02341] [EC:2.7.7.7]
VF_1890  ligA; DNA ligase, NAD(+)-dependent [KO:K01972] [EC:6.5.1.2]
VF_1935  dnaQ; DNA polymerase III epsilon subunit [KO:K02342] [EC:2.7.7.7]
VF_1947  dnaE; DNA polymerase III alpha subunit [KO:K02337] [EC:2.7.7.7]
VF_2289  dam; DNA adenine methylase [KO:K06223] [EC:2.1.1.72]
VF_2325  mutL; methyl-directed mismatch repair protein [KO:K03572]
VF_2382  [KO:K02342] [EC:2.7.7.7]
VF_2514  [KO:K02342] [EC:2.7.7.7]
VF_A0016  [KO:K02342] [EC:2.7.7.7]
VF_A0349  [KO:K02342] [EC:2.7.7.7]
VF_B0045  [KO:K03111]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   

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