KEGG   PATHWAY: ypd00010
Entry
ypd00010                    Pathway                                
Name
Glycolysis / Gluconeogenesis - Yersinia pestis D106004
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ypd00010  Glycolysis / Gluconeogenesis
ypd00010

Module
ypd_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:ypd00010]
ypd_M00002  Glycolysis, core module involving three-carbon compounds [PATH:ypd00010]
ypd_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ypd00010]
ypd_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ypd00010]
Other DBs
GO: 0006096 0006094
Organism
Yersinia pestis D106004 [GN:ypd]
Gene
YPD4_2608  glk; glucokinase [KO:K00845] [EC:2.7.1.2]
YPD4_3270  pgi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
YPD4_0072  pfkA; 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
YPD4_3234  fbp; fructose-1,6-bisphosphatase [KO:K03841] [EC:3.1.3.11]
YPD4_0083  glpX; fructose-1,6-bisphosphatase, class II [KO:K02446] [EC:3.1.3.11]
YPD4_3482  hypothetical protein [KO:K01624] [EC:4.1.2.13]
YPD4_0761  fbaA; fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
YPD4_0079  tpiA; triosephosphate isomerase [KO:K01803] [EC:5.3.1.1]
YPD4_1896  glyceraldehyde 3-phosphate dehydrogenase A [KO:K00134] [EC:1.2.1.12]
YPD4_0760  pgk; phosphoglycerate kinase [KO:K00927] [EC:2.7.2.3]
YPD4_0986  gpmA; phosphoglyceromutase [KO:K01834] [EC:5.4.2.11]
YPD4_0394  gpmB; phosphoglycerate mutase [KO:K15634] [EC:5.4.2.11]
YPD4_0060  phosphoglyceromutase [KO:K15633] [EC:5.4.2.12]
YPD4_2960  eno; phosphopyruvate hydratase [KO:K01689] [EC:4.2.1.11]
YPD4_1824  pykA; pyruvate kinase [KO:K00873] [EC:2.7.1.40]
YPD4_1457  pykF; pyruvate kinase [KO:K00873] [EC:2.7.1.40]
YPD4_1443  ppsA; phosphoenolpyruvate synthase [KO:K01007] [EC:2.7.9.2]
YPD4_3003  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
YPD4_3002  aceF; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
YPD4_3001  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
YPD4_3451  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
YPD4_2043  nifJ; putative pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
YPD4_1335  adhC; alcohol dehydrogenase class III; formaldehyde dehydrogenase [KO:K00121] [EC:1.1.1.284 1.1.1.1]
YPD4_1917  aldehyde-alcohol dehydrogenase [KO:K04072] [EC:1.2.1.10 1.1.1.1]
YPD4_0220  acs; acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
YPD4_0988  Aldose 1-epimerase [KO:K01785] [EC:5.1.3.3]
YPD4_0025  phosphatase [KO:K20866] [EC:3.1.3.10]
YPD4_2344  pgm; phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
YPD4_1895  hypothetical protein [KO:K01792] [EC:5.1.3.15]
YPD4_0119  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
YPD4_0147  putative glycosyl hydrolase [KO:K01222] [EC:3.2.1.86]
YPD4_1112  bglA; 6-phospho-beta-glucosidase [KO:K01223] [EC:3.2.1.86]
YPD4_2624  crr; glucose-specific PTS system enzyme IIA component [KO:K02777] [EC:2.7.1.-]
YPD4_2122  ptsG; PTS system, glucose-specific IIBC component [KO:K02779] [EC:2.7.1.199]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ypd00020  Citrate cycle (TCA cycle)
ypd00030  Pentose phosphate pathway
ypd00500  Starch and sucrose metabolism
ypd00620  Pyruvate metabolism
ypd00640  Propanoate metabolism
ypd00710  Carbon fixation by Calvin cycle
KO pathway
ko00010   
LinkDB

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