09100 Metabolism
09120 Genetic Information Processing
09121 Transcription
09122 Translation
09123 Folding, sorting and degradation
09124 Replication and repair
03030 DNA replication [PATH:esj03030]
03410 Base excision repair [PATH:esj03410]
03420 Nucleotide excision repair [PATH:esj03420]
03430 Mismatch repair [PATH:esj03430]
03440 Homologous recombination [PATH:esj03440]
03450 Non-homologous end-joining [PATH:esj03450]
SJ05684_c14350 Ku domain protein SJ05684_c14360 Ku domain protein SJ05684_b44460 Ku domain protein SJ05684_c11410 ATP-dependent DNA ligase clustered with Ku protein, LigD SJ05684_c27600 ATP-dependent DNA ligase SJ05684_c13960 ATP-dependent DNA ligase
K10979 ku; DNA end-binding protein Ku K10979 ku; DNA end-binding protein Ku K10979 ku; DNA end-binding protein Ku K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
03460 Fanconi anemia pathway
09126 Chromosome
09125 Information processing in viruses
09130 Environmental Information Processing
09140 Cellular Processes
09150 Organismal Systems
09160 Human Diseases
09180 Brite Hierarchies
09181 Protein families: metabolism
09182 Protein families: genetic information processing
03000 Transcription factors [BR:esj03000]
03021 Transcription machinery [BR:esj03021]
03019 Messenger RNA biogenesis [BR:esj03019]
03041 Spliceosome
03011 Ribosome [BR:esj03011]
03009 Ribosome biogenesis [BR:esj03009]
03016 Transfer RNA biogenesis [BR:esj03016]
03012 Translation factors [BR:esj03012]
03110 Chaperones and folding catalysts [BR:esj03110]
04131 Membrane trafficking [BR:esj04131]
04121 Ubiquitin system
03051 Proteasome [BR:esj03051]
03032 DNA replication proteins [BR:esj03032]
03036 Chromosome and associated proteins [BR:esj03036]
03400 DNA repair and recombination proteins [BR:esj03400]
SJ05684_b45560 Methylated-DNA--protein-cysteine methyltransferase SJ05684_c29410 Uracil-DNA glycosylase, family 1 SJ05684_b45630 DNA-3-methyladenine glycosylase II SJ05684_c05440 A/G-specific adenine glycosylase SJ05684_c35430 Endonuclease III SJ05684_c26400 5-methyl-dCTP pyrophosphohydrolase SJ05684_c07520 Nudix hydrolase family protein SJ05684_c36830 Deoxyuridine 5'-triphosphate nucleotidohydrolase SJ05684_c00690 ADA regulatory protein SJ05684_c35450 ADA regulatory protein SJ05684_c34160 Alkylated DNA repair protein AlkB SJ05684_b51100 Uracil-DNA glycosylase, putative family 6 SJ05684_c06620 Uracil-DNA glycosylase, family 4 SJ05684_c26530 DNA-3-methyladenine glycosylase II SJ05684_c03860 DNA-3-methyladenine glycosylase SJ05684_c37030 Formamidopyrimidine-DNA glycosylase SJ05684_c13650 Exodeoxyribonuclease III SJ05684_c31660 Exodeoxyribonuclease III SJ05684_b44430 Exodeoxyribonuclease III SJ05684_c14090 Single-stranded-DNA-specific exonuclease RecJ SJ05684_c22470 DNA ligase SJ05684_c34800 DNA polymerase I SJ05684_c15750 Excinuclease ABC subunit A SJ05684_c18470 Excinuclease ABC subunit B SJ05684_c08150 Excinuclease ABC subunit C SJ05684_c22270 ATP-dependent DNA helicase UvrD/PcrA SJ05684_c15830 ATP-dependent DNA helicase UvrD/PcrA SJ05684_c11660 DNA-directed RNA polymerase beta subunit SJ05684_c11670 DNA-directed RNA polymerase beta' subunit SJ05684_c11980 DNA-directed RNA polymerase alpha subunit SJ05684_c07080 DNA-directed RNA polymerase omega subunit SJ05684_c14700 Transcription-repair coupling factor SJ05684_c00280 DNA mismatch repair protein MutS SJ05684_c04130 DNA mismatch repair protein MutL SJ05684_c36380 Exodeoxyribonuclease VII large subunit SJ05684_c04840 Exodeoxyribonuclease VII small subunit SJ05684_c09520 DNA polymerase III alpha subunit SJ05684_c36730 DNA polymerase III beta subunit SJ05684_c07990 DNA polymerase III chi subunit SJ05684_c33580 DNA polymerase III delta subunit SJ05684_c15150 DNA polymerase III delta prime subunit SJ05684_c33730 DNA polymerase III epsilon subunit SJ05684_c34590 DNA polymerase III epsilon subunit SJ05684_b55280 DNA polymerase III subunit epsilon SJ05684_c35650 DNA polymerase III subunits gamma and tau SJ05684_c15740 Single-stranded DNA-binding protein SJ05684_c16880 RecA protein SJ05684_c27670 Holliday junction DNA helicase RuvA SJ05684_c27660 Holliday junction DNA helicase RuvB SJ05684_c27680 Crossover junction endodeoxyribonuclease RuvC SJ05684_c31200 Helicase PriA essential for oriC/DnaA-independent DNA replication SJ05684_c07720 DNA repair protein RadA SJ05684_c35350 DNA recombination and repair protein RecF SJ05684_c14680 ATP-dependent DNA helicase RecG SJ05684_c07270 DNA recombination and repair protein RecO SJ05684_c35670 Recombination protein RecR SJ05684_c22480 DNA repair protein RecN SJ05684_c34030 ATP-dependent nuclease subunit A SJ05684_c34040 ATP-dependent nuclease subunit B SJ05684_c05870 ATPase component BioM of energizing module of biotin ECF transporter SJ05684_c14350 Ku domain protein SJ05684_c14360 Ku domain protein SJ05684_b44460 Ku domain protein SJ05684_c11410 ATP-dependent DNA ligase clustered with Ku protein, LigD SJ05684_c27600 ATP-dependent DNA ligase SJ05684_c13960 ATP-dependent DNA ligase SJ05684_c15720 DNA gyrase subunit A SJ05684_c33800 DNA gyrase subunit B SJ05684_b50940 DNA topoisomerase IB (poxvirus type) SJ05684_c09660 DNA topoisomerase I SJ05684_c09130 DNA-binding protein HU-beta SJ05684_c08740 Integration host factor alpha subunit SJ05684_c00190 Integration host factor beta subunit SJ05684_c23580 ATP-dependent DNA helicase RecQ SJ05684_c11440 ATP-dependent DNA helicase RecQ SJ05684_b52640 DNA polymerase IV SJ05684_c09540 DNA polymerase IV SJ05684_c15080 SOS-response repressor and protease LexA SJ05684_c31990 hypothetical protein SJ05684_c32000 DNA polymerase-like protein SJ05684_c32010 DNA polymerase III alpha subunit SJ05684_c01540 Helicase domain protein SJ05684_c15770 Ribonucleotide reductase of class II (coenzyme B12-dependent)
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K01520 dut; dUTP diphosphatase [EC:3.6.1.23] K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] K02335 polA; DNA polymerase I [EC:2.7.7.7] K03701 uvrA; excinuclease ABC subunit A K03702 uvrB; excinuclease ABC subunit B K03703 uvrC; excinuclease ABC subunit C K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] K03555 mutS; DNA mismatch repair protein MutS K03572 mutL; DNA mismatch repair protein MutL K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] K03111 ssb; single-strand DNA-binding protein K03553 recA; recombination protein RecA K03550 ruvA; holliday junction DNA helicase RuvA K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] K04485 radA; DNA repair protein RadA/Sms K03629 recF; DNA replication and repair protein RecF K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] K03584 recO; DNA repair protein RecO (recombination protein O) K06187 recR; recombination protein RecR K03631 recN; DNA repair protein RecN (Recombination protein N) K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] K06915 herA; DNA double-strand break repair helicase HerA and related ATPase K10979 ku; DNA end-binding protein Ku K10979 ku; DNA end-binding protein Ku K10979 ku; DNA end-binding protein Ku K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] K03168 topA; DNA topoisomerase I [EC:5.6.2.1] K03168 topA; DNA topoisomerase I [EC:5.6.2.1] K03530 hupB; DNA-binding protein HU-beta K04764 ihfA; integration host factor subunit alpha K05788 ihfB; integration host factor subunit beta K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] K02346 dinB; DNA polymerase IV [EC:2.7.7.7] K02346 dinB; DNA polymerase IV [EC:2.7.7.7] K01356 lexA; repressor LexA [EC:3.4.21.88] K14160 imuA; protein ImuA K14161 imuB; protein ImuB K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
03029 Mitochondrial biogenesis [BR:esj03029]
09183 Protein families: signaling and cellular processes
09185 Viral protein families
09184 RNA family
09190 Not Included in Pathway or Brite
KEGG Orthology (KO) - Sinorhizobium sojae KEGG Orthology (KO) - Sinorhizobium sojae