 Aspartic peptidases
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 Family A1: pepsin family
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Family A2: retropepsin family
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Family A5: thermopsin family
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Family A8: signal peptidase II family
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Family A22: presenilin family
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Family A24: type IV prepilin peptidase family
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 K02654 pilD, pppA; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-]
K10966 tcpJ; toxin coregulated pilus biosynthesis protein J [EC:3.4.23.43 2.1.1.-]
K02506 hofD, hopD; leader peptidase HopD [EC:3.4.23.43]
K02278 cpaA, tadV; prepilin peptidase CpaA [EC:3.4.23.43]
K07991 flaK; archaeal preflagellin peptidase FlaK [EC:3.4.23.52]
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Family A25: gpr protease family
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Family A26: omptin family
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Family A28
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Family A31: HybD endopeptidase family
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Family A36
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Cysteine peptidases
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Glutamic peptidases
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Metallo peptidases
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Family M1
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Family M2
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Family M3
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Family M4: thermolysin family
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Family M5: mycolysin family
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Family M6: immune inhibitor A family
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Family M7: snapalysin family
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Family M8: leishmanolysin family
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Family M9
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Family M10
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K01388 MMP1; matrix metalloproteinase-1 (interstitial collagenase) [EC:3.4.24.7]
K01398 MMP2; matrix metalloproteinase-2 (gelatinase A) [EC:3.4.24.24]
K01394 MMP3; matrix metalloproteinase-3 (stromelysin 1, progelatinase) [EC:3.4.24.17]
K01397 MMP7; matrix metalloproteinase-7 (matrilysin, uterine) [EC:3.4.24.23]
K01402 MMP8; matrix metalloproteinase-8 (neutrophil collagenase) [EC:3.4.24.34]
K01403 MMP9; matrix metalloproteinase-9 (gelatinase B) [EC:3.4.24.35]
K01396 MMP10; matrix metalloproteinase-10 (stromelysin 2) [EC:3.4.24.22]
K07993 MMP11; matrix metalloproteinase-11 (stromelysin 3) [EC:3.4.24.-]
K01413 MMP12; matrix metalloproteinase-12 (macrophage elastase) [EC:3.4.24.65]
K07994 MMP13; matrix metalloproteinase-13 (collagenase 3) [EC:3.4.24.-]
K07763 MMP14; matrix metalloproteinase-14 (membrane-inserted) [EC:3.4.24.80]
K07995 MMP15; matrix metalloproteinase-15 (membrane-inserted) [EC:3.4.24.-]
K07996 MMP16; matrix metalloproteinase-16 (membrane-inserted) [EC:3.4.24.-]
K07997 MMP17; matrix metalloproteinase-17 (membrane-inserted) [EC:3.4.24.-]
K07998 MMP19, MMP18; matrix metalloproteinase-19 (RASI) [EC:3.4.24.-]
K07999 MMP20; matrix metalloproteinase-20 (enamelysin) [EC:3.4.24.-]
K08000 MMP21; matrix metalloproteinase-21 [EC:3.4.24.-]
K08001 MMP23; matrix metalloproteinase-23 (CA-MMP) [EC:3.4.24.-]
K08002 MMP24; matrix metalloproteinase-24 (membrane-inserted) [EC:3.4.24.-]
K08003 MMP25; matrix metalloproteinase-25 (membrane-inserted) [EC:3.4.24.-]
K08004 MMP26; matrix metalloproteinase-26 (matrilysin-2, endometase) [EC:3.4.24.-]
K08005 MMP27; matrix metalloproteinase-27 [EC:3.4.24.-]
K08006 MMP28; matrix metalloproteinase-28 (epilysin) [EC:3.4.24.-]
K07761 5MMP; metalloendoproteinase 5-MMP [EC:3.4.24.-]
K01406 prtC; serralysin [EC:3.4.24.40]
K19957 HE; envelysin [EC:3.4.24.12]
K19959 bftP; fragilysin [EC:3.4.24.74]
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Family M12: astacin/adamalysin family
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Family M13: neprilysin family
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Family M14: carboxypeptidase A family
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Family M15: zinc D-Ala-D-Ala carboxypeptidase family
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Family M16: pitrilysin family
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Family M17: leucyl aminopeptidase family
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Family M18
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Family M19: membrane dipeptidase family
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Family M20
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Family M23
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Family M24
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Family M26
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Family M27
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Family M28: aminopeptidase Y family
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Family M29: aminopeptidase T family
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Family M32: carboxypeptidase Taq family
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Family M34: anthrax lethal factor family
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Family M35: deuterolysin family
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Family M36: fungalysin family
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Family M38: beta-aspartyl dipeptidase family
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Family M41: FtsH endopeptidase family
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Family M42: glutamyl aminopeptidase family
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Family M43: cytophagalysin family
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Family M44
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Family M48: Ste24 endopeptidase family
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Family M49: dipeptidyl-peptidase III family
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Family M50: S2P protease family
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Family M54
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Family M55: DppA aminopeptidase family
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Family M56
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Family M67
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Family M72
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Family M73
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Family M74
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Family M80
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Family M82
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Family M85
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Family M88
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Family M90
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Family M98
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K27948 TCAF; TRPM8 channel-associated factor
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Asparagine peptide lyases
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Mixed peptidases
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Serine peptidases
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Threonine peptidases
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Peptidases of unknown catalytic type
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Family U32
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K08303 prtC, trhP; U32 family peptidase [EC:3.4.-.-]
K24847 rlhA; 23S rRNA 5-hydroxycytidine C2501 synthase
K24845 ubiV; 2-(all-trans-polyprenyl)phenol 6-hydroxylase (prephenate) UbiV [EC:1.97.1.15]
K24844 ubiU; 2-(all-trans-polyprenyl)phenol 6-hydroxylase (prephenate) UbiU [EC:1.97.1.15]
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Family U62
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Peptidase inhibitors
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Peptidases and Inhibitors