KEGG   PATHWAY: aaeg00020
Entry
aaeg00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Achromobacter aegrifaciens
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
aaeg00020  Citrate cycle (TCA cycle)
aaeg00020

Module
aaeg_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:aaeg00020]
aaeg_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:aaeg00020]
aaeg_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:aaeg00020]
aaeg_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:aaeg00020]
aaeg_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:aaeg00020]
Other DBs
GO: 0006099
Organism
Achromobacter aegrifaciens [GN:aaeg]
Gene
RA224_24665  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
RA224_02490  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
RA224_05420  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
RA224_29910  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
RA224_06065  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
RA224_10905  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
RA224_10980  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
RA224_17600  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
RA224_26910  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
RA224_24610  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
RA224_24605  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
RA224_16110  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RA224_19735  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RA224_24600  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RA224_29500  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RA224_23460  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
RA224_23465  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
RA224_08140  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
RA224_24680  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
RA224_24675  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
RA224_24690  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
RA224_24685  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
RA224_27100  FAD-binding protein [KO:K00244] [EC:1.3.5.1]
RA224_27115  2Fe-2S iron-sulfur cluster-binding protein [KO:K00245] [EC:1.3.5.1]
RA224_27110  succinate dehydrogenase [KO:K00246]
RA224_27105  succinate dehydrogenase [KO:K00247]
RA224_19700  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
RA224_27920  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
RA224_27775  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
RA224_24700  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
RA224_20755  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
RA224_19260  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
RA224_20865  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
RA224_24645  mdeB; alpha-ketoglutarate dehydrogenase [KO:K00163] [EC:1.2.4.1]
RA224_19255  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
RA224_29495  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
aaeg00010  Glycolysis / Gluconeogenesis
aaeg00053  Ascorbate and aldarate metabolism
aaeg00061  Fatty acid biosynthesis
aaeg00071  Fatty acid degradation
aaeg00190  Oxidative phosphorylation
aaeg00220  Arginine biosynthesis
aaeg00250  Alanine, aspartate and glutamate metabolism
aaeg00280  Valine, leucine and isoleucine degradation
aaeg00350  Tyrosine metabolism
aaeg00470  D-Amino acid metabolism
aaeg00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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