KEGG   PATHWAY: abc00020
Entry
abc00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Acinetobacter baumannii ACICU
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
abc00020  Citrate cycle (TCA cycle)
abc00020

Module
abc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:abc00020]
abc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:abc00020]
abc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:abc00020]
abc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:abc00020]
abc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:abc00020]
Other DBs
GO: 0006099
Organism
Acinetobacter baumannii ACICU [GN:abc]
Gene
ACICU_02961  Citrate synthase [KO:K01647] [EC:2.3.3.1]
ACICU_00562  Aconitase A [KO:K01681] [EC:4.2.1.3]
ACICU_02328  Aconitase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
ACICU_02687  Isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
ACICU_02689  Monomeric isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
ACICU_02955  2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component [KO:K00164] [EC:1.2.4.2]
ACICU_02954  Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component [KO:K00658] [EC:2.3.1.61]
ACICU_03185  Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component [KO:K00382] [EC:1.8.1.4]
ACICU_02953  Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component [KO:K00382] [EC:1.8.1.4]
ACICU_01738  Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component [KO:K00382] [EC:1.8.1.4]
ACICU_02951  Succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
ACICU_02952  Succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
ACICU_03426  Acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
ACICU_02958  Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
ACICU_02957  Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [KO:K00240] [EC:1.3.5.1]
ACICU_02960  Succinate dehydrogenase/fumarate reductase, cytochrome b subunit [KO:K00241]
ACICU_02959  Succinate dehydrogenase, hydrophobic anchor subunit [KO:K00242]
ACICU_00491  putative Ribosomal protein L1 [KO:K01676] [EC:4.2.1.2]
ACICU_02112  Fumarase [KO:K01679] [EC:4.2.1.2]
ACICU_03222  Malate/lactate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ACICU_00887  predicted dehydrogenase [KO:K00116] [EC:1.1.5.4]
ACICU_02913  Phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
ACICU_03525  Pyruvate dehydrogenase complex, dehydrogenase (E1) component [KO:K00163] [EC:1.2.4.1]
ACICU_01737  Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component [KO:K00627] [EC:2.3.1.12]
ACICU_03524  Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
abc00010  Glycolysis / Gluconeogenesis
abc00053  Ascorbate and aldarate metabolism
abc00061  Fatty acid biosynthesis
abc00071  Fatty acid degradation
abc00190  Oxidative phosphorylation
abc00220  Arginine biosynthesis
abc00250  Alanine, aspartate and glutamate metabolism
abc00280  Valine, leucine and isoleucine degradation
abc00350  Tyrosine metabolism
abc00470  D-Amino acid metabolism
abc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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