KEGG   PATHWAY: abd00020
Entry
abd00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Acinetobacter baumannii TCDC-AB0715
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
abd00020  Citrate cycle (TCA cycle)
abd00020

Module
abd_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:abd00020]
abd_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:abd00020]
abd_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:abd00020]
abd_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:abd00020]
abd_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:abd00020]
Other DBs
GO: 0006099
Organism
Acinetobacter baumannii TCDC-AB0715 [GN:abd]
Gene
ABTW07_3183  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
ABTW07_0591  acnA; aconitase A [KO:K01681] [EC:4.2.1.3]
ABTW07_2521  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
ABTW07_2929  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
ABTW07_2931  monomeric isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
ABTW07_3178  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
ABTW07_3177  pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component [KO:K00658] [EC:2.3.1.61]
ABTW07_3400  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
ABTW07_1951  pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component [KO:K00382] [EC:1.8.1.4]
ABTW07_3176  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
ABTW07_3174  sucD; succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
ABTW07_3175  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
ABTW07_3641  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
ABTW07_3180  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
ABTW07_3179  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
ABTW07_3182  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
ABTW07_3181  sdhD; succinate dehydrogenase, hydrophobic anchor subunit [KO:K00242]
ABTW07_0521  putative ribosomal protein L1 [KO:K01676] [EC:4.2.1.2]
ABTW07_2317  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
ABTW07_3437  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ABTW07_1016  mqo; malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
ABTW07_3133  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
ABTW07_3733  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
ABTW07_1950  pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component [KO:K00627] [EC:2.3.1.12]
ABTW07_3732  aceF; pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
abd00010  Glycolysis / Gluconeogenesis
abd00053  Ascorbate and aldarate metabolism
abd00061  Fatty acid biosynthesis
abd00071  Fatty acid degradation
abd00190  Oxidative phosphorylation
abd00220  Arginine biosynthesis
abd00250  Alanine, aspartate and glutamate metabolism
abd00280  Valine, leucine and isoleucine degradation
abd00350  Tyrosine metabolism
abd00470  D-Amino acid metabolism
abd00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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