KEGG   PATHWAY: abr00020
Entry
abr00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Acinetobacter baumannii MDR-TJ
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
abr00020  Citrate cycle (TCA cycle)
abr00020

Module
abr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:abr00020]
abr_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:abr00020]
abr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:abr00020]
abr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:abr00020]
abr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:abr00020]
Other DBs
GO: 0006099
Organism
Acinetobacter baumannii MDR-TJ [GN:abr]
Gene
ABTJ_00751  citrate synthase I, hexameric type [KO:K01647] [EC:2.3.3.1]
ABTJ_03223  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
ABTJ_01414  aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
ABTJ_01028  isocitrate dehydrogenase, NADP-dependent, monomeric type [KO:K00031] [EC:1.1.1.42]
ABTJ_01030  isocitrate dehydrogenase, NADP-dependent, prokaryotic type [KO:K00031] [EC:1.1.1.42]
ABTJ_00756  2-oxoglutarate dehydrogenase, E1 component [KO:K00164] [EC:1.2.4.2]
ABTJ_00757  2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
ABTJ_00758  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
ABTJ_01970  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
ABTJ_00519  pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase component [KO:K00382] [EC:1.8.1.4]
ABTJ_00760  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
ABTJ_00759  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
ABTJ_00260  succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
ABTJ_00754  succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
ABTJ_00755  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
ABTJ_00752  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
ABTJ_00753  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
ABTJ_03293  hydro-lyase, Fe-S type, tartrate/fumarate subfamily,hydro-lyase family enzyme, Fe-S type, tartrate/fumarate subfamily [KO:K01676] [EC:4.2.1.2]
ABTJ_01598  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
ABTJ_00472  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ABTJ_02885  malate:quinone-oxidoreductase [KO:K00116] [EC:1.1.5.4]
ABTJ_00800  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
ABTJ_00153  pyruvate dehydrogenase E1 component, homodimeric type [KO:K00163] [EC:1.2.4.1]
ABTJ_00154  pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component [KO:K00627] [EC:2.3.1.12]
ABTJ_01971  pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
abr00010  Glycolysis / Gluconeogenesis
abr00053  Ascorbate and aldarate metabolism
abr00061  Fatty acid biosynthesis
abr00071  Fatty acid degradation
abr00190  Oxidative phosphorylation
abr00220  Arginine biosynthesis
abr00250  Alanine, aspartate and glutamate metabolism
abr00280  Valine, leucine and isoleucine degradation
abr00350  Tyrosine metabolism
abr00470  D-Amino acid metabolism
abr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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