KEGG   PATHWAY: acc00020
Entry
acc00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Acinetobacter pittii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
acc00020  Citrate cycle (TCA cycle)
acc00020

Module
acc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:acc00020]
acc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:acc00020]
acc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:acc00020]
acc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:acc00020]
acc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:acc00020]
Other DBs
GO: 0006099
Organism
Acinetobacter pittii [GN:acc]
Gene
BDGL_002157  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
BDGL_003463  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
BDGL_001615  acnB; aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
BDGL_001946  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BDGL_001948  idh; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BDGL_002149  sucA; 2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
BDGL_002148  sucB; dihydrolipoamide succinyltransferase, component of 2-oxoglutarate dehydrogenase complex (E2) [KO:K00658] [EC:2.3.1.61]
BDGL_001064  acoD; dihydrolipoamide dehydrogenase (E3 component of pyruvate and 2-oxoglutarate dehydrogenase complexes) [KO:K00382] [EC:1.8.1.4]
BDGL_002394  pdhD; putative pyridine nucleotide-disulfide oxidoreductase, class I [KO:K00382] [EC:1.8.1.4]
BDGL_002147  lpdG; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BDGL_002145  sucD; succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
BDGL_002146  sucC; succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
BDGL_002696  cat1; putative acetyl-CoA hydrolase/transferase [KO:K18118] [EC:2.8.3.18]
BDGL_002153  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BDGL_002152  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BDGL_002155  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
BDGL_002154  sdhD; succinate dehydrogenase, hydrophobic subunit [KO:K00242]
BDGL_003393  fumA; fumarate hydratase [KO:K01676] [EC:4.2.1.2]
BDGL_001475  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
BDGL_002485  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BDGL_000203  mqo; malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
BDGL_002111  pckG; phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
BDGL_002794  aceE; pyruvate decarboxylase, E1 component of the pyruvate dehydrogenase complex [KO:K00163] [EC:1.2.4.1]
BDGL_001063  acoC; acoC; dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
BDGL_002793  aceF; dihydrolipoamide S-acetyltransferase, E2 component of the pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
acc00010  Glycolysis / Gluconeogenesis
acc00053  Ascorbate and aldarate metabolism
acc00061  Fatty acid biosynthesis
acc00071  Fatty acid degradation
acc00190  Oxidative phosphorylation
acc00220  Arginine biosynthesis
acc00250  Alanine, aspartate and glutamate metabolism
acc00280  Valine, leucine and isoleucine degradation
acc00350  Tyrosine metabolism
acc00470  D-Amino acid metabolism
acc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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