KEGG   PATHWAY: afri00020
Entry
afri00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Allofrancisella frigidaquae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
afri00020  Citrate cycle (TCA cycle)
afri00020

Module
afri_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:afri00020]
afri_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:afri00020]
afri_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:afri00020]
afri_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:afri00020]
afri_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:afri00020]
Other DBs
GO: 0006099
Organism
Allofrancisella frigidaquae [GN:afri]
Gene
E3E15_01000  [KO:K01676] [EC:4.2.1.2]
E3E15_01045  acnA; aconitate hydratase AcnA [KO:K27802]
E3E15_01365  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
E3E15_01370  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
E3E15_01375  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
E3E15_03200  [KO:K01679] [EC:4.2.1.2]
E3E15_03320  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
E3E15_05160  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
E3E15_05165  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
E3E15_05710  [KO:K00031] [EC:1.1.1.42]
E3E15_05770  [KO:K01610] [EC:4.1.1.49]
E3E15_07590  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
E3E15_07595  [KO:K00164] [EC:1.2.4.2]
E3E15_07600  [KO:K00240] [EC:1.3.5.1]
E3E15_07605  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
E3E15_07610  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
E3E15_07615  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
E3E15_07620  [KO:K01647] [EC:2.3.3.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
afri00010  Glycolysis / Gluconeogenesis
afri00061  Fatty acid biosynthesis
afri00071  Fatty acid degradation
afri00190  Oxidative phosphorylation
afri00220  Arginine biosynthesis
afri00250  Alanine, aspartate and glutamate metabolism
afri00280  Valine, leucine and isoleucine degradation
afri00350  Tyrosine metabolism
afri00470  D-Amino acid metabolism
afri00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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