KEGG   PATHWAY: agt00240
Entry
agt00240                    Pathway                                
Name
Pyrimidine metabolism - Agrobacterium sp. 33MFTa1.1
Class
Metabolism; Nucleotide metabolism
Pathway map
agt00240  Pyrimidine metabolism
agt00240

Module
agt_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:agt00240]
agt_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:agt00240]
agt_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:agt00240]
agt_M00939  Pyrimidine degradation, uracil => 3-hydroxypropanoate [PATH:agt00240]
Other DBs
GO: 0006220 0006213
Organism
Agrobacterium sp. 33MFTa1.1 [GN:agt]
Gene
EYD00_08965  carB; carbamoyl-phosphate synthase large subunit [KO:K01955] [EC:6.3.5.5]
EYD00_08930  carA; carbamoyl-phosphate synthase small subunit [KO:K01956] [EC:6.3.5.5]
EYD00_04785  aspartate carbamoyltransferase catalytic subunit [KO:K00609] [EC:2.1.3.2]
EYD00_04780  dihydroorotase [KO:K01465] [EC:3.5.2.3]
EYD00_21470  amidohydrolase/deacetylase family metallohydrolase [KO:K01465] [EC:3.5.2.3]
EYD00_00370  dihydroorotase [KO:K01465] [EC:3.5.2.3]
EYD00_00600  quinone-dependent dihydroorotate dehydrogenase [KO:K00254] [EC:1.3.5.2]
EYD00_00375  orotate phosphoribosyltransferase [KO:K00762] [EC:2.4.2.10]
EYD00_13705  orotidine-5'-phosphate decarboxylase [KO:K01591] [EC:4.1.1.23]
EYD00_05120  UMP kinase [KO:K09903] [EC:2.7.4.22]
EYD00_03915  nucleoside-diphosphate kinase [KO:K00940] [EC:2.7.4.6]
EYD00_05790  nucleoside triphosphate pyrophosphohydrolase [KO:K04765] [EC:3.6.1.9]
EYD00_12270  Maf-like protein [KO:K06287] [EC:3.6.1.-]
EYD00_00835  Maf-like protein [KO:K06287] [EC:3.6.1.-]
EYD00_06165  CTP synthase [KO:K01937] [EC:6.3.4.2]
EYD00_19815  (d)CMP kinase [KO:K00945] [EC:2.7.4.25]
EYD00_17290  LysM peptidoglycan-binding domain-containing protein [KO:K11751] [EC:3.1.3.5 3.6.1.45]
EYD00_06560  surE; 5'/3'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
EYD00_12925  uracil phosphoribosyltransferase [KO:K00761] [EC:2.4.2.9]
EYD00_17080  TIGR00282 family metallophosphoesterase [KO:K09769] [EC:3.1.4.16]
EYD00_07695  pseudouridine-5'-phosphate glycosidase [KO:K16329] [EC:4.2.1.70]
EYD00_12900  cytidine deaminase [KO:K01489] [EC:3.5.4.5]
EYD00_20345  amidohydrolase [KO:K01485] [EC:3.5.4.1 3.5.4.21]
EYD00_00540  2'-deoxycytidine 5'-triphosphate deaminase [KO:K01494] [EC:3.5.4.13]
EYD00_12610  nrdE; class 1b ribonucleoside-diphosphate reductase subunit alpha [KO:K00525] [EC:1.17.4.1]
EYD00_06715  vitamin B12-dependent ribonucleotide reductase [KO:K00525] [EC:1.17.4.1]
EYD00_12615  nrdF; class 1b ribonucleoside-diphosphate reductase subunit beta [KO:K00526] [EC:1.17.4.1]
EYD00_03580  HD family hydrolase [KO:K06952] [EC:3.1.3.89]
EYD00_05590  dTMP kinase [KO:K00943] [EC:2.7.4.9]
EYD00_13785  dUTP diphosphatase [KO:K01520] [EC:3.6.1.23]
EYD00_13885  dUTP diphosphatase [KO:K01520] [EC:3.6.1.23]
EYD00_12915  deoA; thymidine phosphorylase [KO:K00758] [EC:2.4.2.4]
EYD00_09490  thymidine kinase [KO:K00857] [EC:2.7.1.21]
EYD00_08385  thymidylate synthase [KO:K00560] [EC:2.1.1.45]
EYD00_09940  hydA; dihydropyrimidinase [KO:K01464] [EC:3.5.2.2]
EYD00_09935  Zn-dependent hydrolase [KO:K06016] [EC:3.5.1.6 3.5.1.87]
EYD00_10560  rutA; pyrimidine utilization protein A [KO:K09018] [EC:1.14.99.46]
EYD00_10535  rutF; pyrimidine utilization flavin reductase protein F [KO:K09024] [EC:1.5.1.-]
EYD00_10555  rutB; pyrimidine utilization protein B [KO:K09020] [EC:3.5.1.110]
EYD00_10550  rutC; pyrimidine utilization protein C [KO:K09021]
EYD00_10545  rutD; pyrimidine utilization protein D [KO:K09023] [EC:3.5.1.-]
EYD00_10540  malonic semialdehyde reductase [KO:K09019] [EC:1.1.1.-]
Compound
C00015  UDP
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C00941  3',5'-Cyclic CMP
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
C22509  3',5'-Cyclic UMP
Related
pathway
agt00030  Pentose phosphate pathway
agt00220  Arginine biosynthesis
agt00250  Alanine, aspartate and glutamate metabolism
agt00280  Valine, leucine and isoleucine degradation
agt00410  beta-Alanine metabolism
KO pathway
ko00240   
LinkDB

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