KEGG   PATHWAY: aha00020
Entry
aha00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Aeromonas hydrophila subsp. hydrophila ATCC 7966
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
aha00020  Citrate cycle (TCA cycle)
aha00020

Module
aha_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:aha00020]
aha_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:aha00020]
aha_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:aha00020]
aha_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:aha00020]
aha_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:aha00020]
Other DBs
GO: 0006099
Organism
Aeromonas hydrophila subsp. hydrophila ATCC 7966 [GN:aha]
Gene
AHA_1922  gltA; citrate synthase I [KO:K01647] [EC:2.3.3.1]
AHA_3856  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
AHA_1436  icd; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
AHA_1152  3-isopropylmalate dehydrogenase [KO:K00030] [EC:1.1.1.41]
AHA_1927  sucA; 2-oxoglutarate dehydrogenase, E1 component [KO:K00164] [EC:1.2.4.2]
AHA_1928  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
AHA_3861  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AHA_1930  succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
AHA_1929  succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
AHA_1925  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
AHA_1926  succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
AHA_1923  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
AHA_1924  succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
AHA_3208  frdA; fumarate reductase, flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
AHA_3209  fumarate reductase iron-sulfur protein [KO:K00245] [EC:1.3.5.1]
AHA_3210  Fumarate reductase subunit C [KO:K00246]
AHA_3211  fumarate reductase subunit D [KO:K00247]
AHA_2434  fumarate hydratase, class I [KO:K01676] [EC:4.2.1.2]
AHA_3294  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
AHA_0659  mdh; malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
AHA_0565  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
AHA_3863  pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
AHA_3862  aceF; pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
AHA_1497  nifJ-1; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
AHA_3174  nifJ-2; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
aha00010  Glycolysis / Gluconeogenesis
aha00053  Ascorbate and aldarate metabolism
aha00061  Fatty acid biosynthesis
aha00071  Fatty acid degradation
aha00190  Oxidative phosphorylation
aha00220  Arginine biosynthesis
aha00250  Alanine, aspartate and glutamate metabolism
aha00280  Valine, leucine and isoleucine degradation
aha00350  Tyrosine metabolism
aha00470  D-Amino acid metabolism
aha00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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