KEGG   PATHWAY: ahr00020
Entry
ahr00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Aeromonas hydrophila subsp. hydrophila AL09-71
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ahr00020  Citrate cycle (TCA cycle)
ahr00020

Module
ahr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ahr00020]
ahr_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ahr00020]
ahr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ahr00020]
ahr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ahr00020]
ahr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ahr00020]
Other DBs
GO: 0006099
Organism
Aeromonas hydrophila subsp. hydrophila AL09-71 [GN:ahr]
Gene
V428_10685  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
V428_21305  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
V428_07990  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
V428_06360  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
V428_10710  2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
V428_10715  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
V428_21335  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
V428_10725  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
V428_10720  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
V428_10700  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
V428_10705  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
V428_10695  sdhD; succinate dehydrogenase [KO:K00242]
V428_17845  fumarate reductase [KO:K00244] [EC:1.3.5.1]
V428_17850  fumarate reductase [KO:K00245] [EC:1.3.5.1]
V428_17855  fumarate reductase [KO:K00246]
V428_17860  fumarate reductase [KO:K00247]
V428_11090  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
V428_18275  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
V428_03535  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
V428_03040  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
V428_21345  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
V428_21340  aceF; pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
V428_08545  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
V428_17675  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ahr00010  Glycolysis / Gluconeogenesis
ahr00053  Ascorbate and aldarate metabolism
ahr00061  Fatty acid biosynthesis
ahr00071  Fatty acid degradation
ahr00190  Oxidative phosphorylation
ahr00220  Arginine biosynthesis
ahr00250  Alanine, aspartate and glutamate metabolism
ahr00280  Valine, leucine and isoleucine degradation
ahr00350  Tyrosine metabolism
ahr00470  D-Amino acid metabolism
ahr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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