KEGG   PATHWAY: aht00020
Entry
aht00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Antarctobacter heliothermus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
aht00020  Citrate cycle (TCA cycle)
aht00020

Module
aht_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:aht00020]
aht_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:aht00020]
aht_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:aht00020]
aht_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:aht00020]
aht_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:aht00020]
Other DBs
GO: 0006099
Organism
Antarctobacter heliothermus [GN:aht]
Gene
ANTHELSMS3_02758  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
ANTHELSMS3_04598  citB; aconitate hydratase A [KO:K01681] [EC:4.2.1.3]
ANTHELSMS3_03687  acnA; aconitate hydratase A [KO:K01681] [EC:4.2.1.3]
ANTHELSMS3_03368  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
ANTHELSMS3_01089  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
ANTHELSMS3_02119  sucA; 2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
ANTHELSMS3_02118  sucB; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
ANTHELSMS3_01275  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ANTHELSMS3_02115  lpd3; dihydrolipoyl dehydrogenase 3 [KO:K00382] [EC:1.8.1.4]
ANTHELSMS3_02957  lpd; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ANTHELSMS3_02120  sucD; succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
ANTHELSMS3_02122  sucC; succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
ANTHELSMS3_02134  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
ANTHELSMS3_02138  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
ANTHELSMS3_02132  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
ANTHELSMS3_02133  succinate dehydrogenase/fumarate reductase transmembrane subunit [KO:K00242]
ANTHELSMS3_03474  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
ANTHELSMS3_02124  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ANTHELSMS3_04055  cfiB; 2-oxoglutarate carboxylase small subunit [KO:K01958] [EC:6.4.1.1]
ANTHELSMS3_00709  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
ANTHELSMS3_01273  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
ANTHELSMS3_02311  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
ANTHELSMS3_03041  acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha [KO:K00161] [EC:1.2.4.1]
ANTHELSMS3_03039  bfmBAB; 2-oxoisovalerate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
ANTHELSMS3_01274  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
ANTHELSMS3_03037  pdhC; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
ANTHELSMS3_02312  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
aht00010  Glycolysis / Gluconeogenesis
aht00053  Ascorbate and aldarate metabolism
aht00061  Fatty acid biosynthesis
aht00071  Fatty acid degradation
aht00190  Oxidative phosphorylation
aht00220  Arginine biosynthesis
aht00250  Alanine, aspartate and glutamate metabolism
aht00280  Valine, leucine and isoleucine degradation
aht00350  Tyrosine metabolism
aht00470  D-Amino acid metabolism
aht00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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