KEGG   PATHWAY: ais00020
Entry
ais00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Achromobacter insolitus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ais00020  Citrate cycle (TCA cycle)
ais00020

Module
ais_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ais00020]
ais_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ais00020]
ais_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ais00020]
ais_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ais00020]
Other DBs
GO: 0006099
Organism
Achromobacter insolitus [GN:ais]
Gene
BUW96_28195  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
BUW96_15885  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
BUW96_18240  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
BUW96_15305  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
BUW96_11395  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
BUW96_23540  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
BUW96_11320  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
BUW96_05465  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
BUW96_20320  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
BUW96_18185  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BUW96_18180  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BUW96_06995  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BUW96_03255  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BUW96_03685  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BUW96_28365  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BUW96_18175  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BUW96_13445  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BUW96_00095  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
BUW96_00090  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
BUW96_13180  propionyl-CoA--succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
BUW96_18255  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BUW96_18250  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BUW96_18265  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
BUW96_18260  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
BUW96_20500  succinate dehydrogenase/fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
BUW96_20515  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
BUW96_20510  succinate dehydrogenase [KO:K00246]
BUW96_20505  succinate dehydrogenase [KO:K00247]
BUW96_03290  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
BUW96_21270  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
BUW96_21125  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
BUW96_18275  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BUW96_02340  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
BUW96_02230  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
BUW96_03675  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
BUW96_18220  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
BUW96_03680  dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
BUW96_28370  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
BUW96_23370  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
BUW96_13485  dihydrolipoamide acyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ais00010  Glycolysis / Gluconeogenesis
ais00053  Ascorbate and aldarate metabolism
ais00061  Fatty acid biosynthesis
ais00071  Fatty acid degradation
ais00190  Oxidative phosphorylation
ais00220  Arginine biosynthesis
ais00250  Alanine, aspartate and glutamate metabolism
ais00280  Valine, leucine and isoleucine degradation
ais00350  Tyrosine metabolism
ais00470  D-Amino acid metabolism
ais00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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