KEGG   PATHWAY: ajn00020
Entry
ajn00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Acinetobacter junii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ajn00020  Citrate cycle (TCA cycle)
ajn00020

Module
ajn_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ajn00020]
ajn_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ajn00020]
ajn_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ajn00020]
ajn_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ajn00020]
ajn_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ajn00020]
Other DBs
GO: 0006099
Organism
Acinetobacter junii [GN:ajn]
Gene
BVL33_13605  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
BVL33_04270  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
BVL33_10890  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
BVL33_13050  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
BVL33_13035  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
BVL33_13580  2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
BVL33_13575  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BVL33_13570  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BVL33_13560  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
BVL33_13565  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
BVL33_02585  propionyl-CoA--succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
BVL33_13590  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BVL33_13585  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BVL33_13600  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
BVL33_13595  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
BVL33_03775  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
BVL33_09220  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BVL33_15025  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BVL33_05175  malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
BVL33_13215  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
BVL33_02180  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
BVL33_02185  pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ajn00010  Glycolysis / Gluconeogenesis
ajn00061  Fatty acid biosynthesis
ajn00071  Fatty acid degradation
ajn00190  Oxidative phosphorylation
ajn00220  Arginine biosynthesis
ajn00250  Alanine, aspartate and glutamate metabolism
ajn00280  Valine, leucine and isoleucine degradation
ajn00350  Tyrosine metabolism
ajn00470  D-Amino acid metabolism
ajn00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system