KEGG   PATHWAY: amag00020
Entry
amag00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Alteromonas mediterranea MED64
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
amag00020  Citrate cycle (TCA cycle)
amag00020

Module
amag_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:amag00020]
amag_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:amag00020]
amag_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:amag00020]
amag_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:amag00020]
amag_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:amag00020]
Other DBs
GO: 0006099
Organism
Alteromonas mediterranea MED64 [GN:amag]
Gene
I533_09440  citrate synthase [KO:K01647] [EC:2.3.3.1]
I533_01915  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
I533_03485  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
I533_08900  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
I533_04470  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
I533_09465  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
I533_09470  dihydrolipoyltranssuccinate transferase, component of the 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
I533_14105  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
I533_09480  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
I533_09475  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
I533_09455  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
I533_09460  succinate dehydrogenase catalytic subunit [KO:K00240] [EC:1.3.5.1]
I533_09445  succinate dehydrogenase, cytochrome b subunit [KO:K00241]
I533_09450  succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with sdhC [KO:K00242]
I533_09845  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
I533_14930  fumarase [KO:K01679] [EC:4.2.1.2]
I533_16280  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
I533_18550  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
I533_14115  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
I533_14110  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
amag00010  Glycolysis / Gluconeogenesis
amag00053  Ascorbate and aldarate metabolism
amag00061  Fatty acid biosynthesis
amag00071  Fatty acid degradation
amag00190  Oxidative phosphorylation
amag00220  Arginine biosynthesis
amag00250  Alanine, aspartate and glutamate metabolism
amag00280  Valine, leucine and isoleucine degradation
amag00350  Tyrosine metabolism
amag00470  D-Amino acid metabolism
amag00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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